Bioinformatics

Thomas Lengauer

Editorial
Bioinformatics 2002 18: S1; doi:10.1093/bioinformatics/18.suppl_2.S1 [Print PDF][Screen PDF]  

ECCB 2002 Organization
Bioinformatics 2002 18: S2-S3; doi:10.1093/bioinformatics/18.suppl_2.S2 [Print PDF][Screen PDF]  

Ernst Althaus, Alberto Caprara, Hans-Peter Lenhof, and Knut Reinert

Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics
Bioinformatics 2002 18: S4-S16; doi:10.1093/bioinformatics/18.suppl_2.S4 [Abstract] [Print PDF][Screen PDF]  

Siv G.E. Andersson, Cecilia Alsmark, Björn Canbäck, Wagied Davids, Carolin Frank, Olof Karlberg, Lisa Klasson, Boris Antoine-Legault, Alex Mira, and Ivica Tamas

Comparative genomics of microbial pathogens and symbionts
Bioinformatics 2002 18: S17; doi:10.1093/bioinformatics/18.suppl_2.S17 [Abstract] [Print PDF][Screen PDF]  

Mehmet Serkan Apaydin, Carlos E. Guestrin, Chris Varma, Douglas L. Brutlag, and Jean-Claude Latombe

Stochastic roadmap simulation for the study of ligand-protein interactions
Bioinformatics 2002 18: S18-S26; doi:10.1093/bioinformatics/18.suppl_2.S18 [Abstract] [Print PDF][Screen PDF]  

Masanori Arita, Koji Tsuda, and Kiyoshi Asai

Modeling splicing sites with pairwise correlations
Bioinformatics 2002 18: S27-S34; doi:10.1093/bioinformatics/18.suppl_2.S27 [Abstract] [Print PDF][Screen PDF]  

Ana L.C. Bazzan, Paulo M. Engel, Luciana F. Schroeder, and Sérgio C. da Silva

Automated annotation of keywords for proteins related to mycoplasmataceae using machine learning techniques
Bioinformatics 2002 18: S35-S43; doi:10.1093/bioinformatics/18.suppl_2.S35 [Abstract] [Print PDF][Screen PDF]  

Gary Benson

A new distance measure for comparing sequence profiles based on path lengths along an entropy surface
Bioinformatics 2002 18: S44-S53; doi:10.1093/bioinformatics/18.suppl_2.S44 [Abstract] [Print PDF][Screen PDF]  

A. Bergeron, S. Heber, and J. Stoye

Common intervals and sorting by reversals: a marriage of necessity
Bioinformatics 2002 18: S54-S63; doi:10.1093/bioinformatics/18.suppl_2.S54 [Abstract] [Print PDF][Screen PDF]  

Peer Bork

Comparative analysis of protein interaction networks
Bioinformatics 2002 18: S64; doi:10.1093/bioinformatics/18.suppl_2.S64 [Abstract] [Print PDF][Screen PDF]  

Stéphanie Boué, Martin Vingron, Evgenia Kriventseva, and Ina Koch

Theoretical analysis of alternative splice forms using computational methods
Bioinformatics 2002 18: S65-S73; doi:10.1093/bioinformatics/18.suppl_2.S65 [Abstract] [Print PDF][Screen PDF]  

Douglas Brutlag, Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Singh, and Jean-Claude Latombe

Using robotics to fold proteins and dock ligands
Bioinformatics 2002 18: S74; doi:10.1093/bioinformatics/18.suppl_2.S74 [Abstract] [Print PDF][Screen PDF]  

Sven Degroeve, Bernard De Baets, Yves Van de Peer, and Pierre Rouzé

Feature subset selection for splice site prediction
Bioinformatics 2002 18: S75-S83; doi:10.1093/bioinformatics/18.suppl_2.S75 [Abstract] [Print PDF][Screen PDF]  

Christoph Dieterich, Brian Cusack, Haiyan Wang, Katja Rateitschak, Antje Krause, and Martin Vingron

Annotating regulatory DNA based on man-mouse genomic comparison
Bioinformatics 2002 18: S84-S90; doi:10.1093/bioinformatics/18.suppl_2.S84 [Abstract] [Print PDF][Screen PDF]  

Laurent Duret

Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants
Bioinformatics 2002 18: S91; doi:10.1093/bioinformatics/18.suppl_2.S91 [Abstract] [Print PDF][Screen PDF]  

Olivier Elemento and Olivier Gascuel

An efficient and accurate distance based algorithm to reconstruct tandem duplication trees
Bioinformatics 2002 18: S92-S99; doi:10.1093/bioinformatics/18.suppl_2.S92 [Abstract] [Print PDF][Screen PDF]  

Kyle Ellrott, Chuhu Yang, Frances M. Sladek, and Tao Jiang

Identifying transcription factor binding sites through Markov chain optimization
Bioinformatics 2002 18: S100-S109; doi:10.1093/bioinformatics/18.suppl_2.S100 [Abstract] [Print PDF][Screen PDF]  

J. Freudenberg and P. Propping

A similarity-based method for genome-wide prediction of disease-relevant human genes
Bioinformatics 2002 18: S110-S115; doi:10.1093/bioinformatics/18.suppl_2.S110 [Abstract] [Print PDF][Screen PDF]  

Anna Gambin, Slawomir Lasota, Radoslaw Szklarczyk, Jerzy Tiuryn, and Jerzy Tyszkiewicz

Contextual alignment of biological sequences (Extended abstract)
Bioinformatics 2002 18: S116-S127; doi:10.1093/bioinformatics/18.suppl_2.S116 [Abstract] [Print PDF][Screen PDF]  

Jens Gramm and Rolf Niedermeier

Breakpoint medians and breakpoint phylogenies: A fixed-parameter approach
Bioinformatics 2002 18: S128-S139; doi:10.1093/bioinformatics/18.suppl_2.S128 [Abstract] [Print PDF][Screen PDF]  

Tim Hubbard

Biological information: making it accessible and integrated (and trying to make sense of it)
Bioinformatics 2002 18: S140; doi:10.1093/bioinformatics/18.suppl_2.S140 [Abstract] [Print PDF][Screen PDF]  

Ho-Youl Jung and Hwan-Gue Cho

An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysis
Bioinformatics 2002 18: S141-S151; doi:10.1093/bioinformatics/18.suppl_2.S141 [Abstract] [Print PDF][Screen PDF]  

Andres Metspalu

Estonian Genome Project—before the take-off and take-off
Bioinformatics 2002 18: S152; doi:10.1093/bioinformatics/18.suppl_2.S152 [Abstract] [Print PDF][Screen PDF]  

U. Mückstein, I.L. Hofacker, and P.F. Stadler

Stochastic pairwise alignments
Bioinformatics 2002 18: S153-S160; doi:10.1093/bioinformatics/18.suppl_2.S153 [Abstract] [Print PDF][Screen PDF]  

P. Nicodème, T. Doerks, and M. Vingron

Proteome analysis based on motif statistics
Bioinformatics 2002 18: S161-S171; doi:10.1093/bioinformatics/18.suppl_2.S161 [Abstract] [Print PDF][Screen PDF]  

Kimmo Palin, Esko Ukkonen, Alvis Brazma, and Jaak Vilo

Correlating gene promoters and expression in gene disruption experiments
Bioinformatics 2002 18: S172-S180; doi:10.1093/bioinformatics/18.suppl_2.S172 [Abstract] [Print PDF][Screen PDF]  

Scott Patterson

Selecting targets for therapeutic validation through differential protein expression using chromatography-mass spectrometry
Bioinformatics 2002 18: S181; doi:10.1093/bioinformatics/18.suppl_2.S181 [Abstract] [Print PDF][Screen PDF]  

P. Pipenbacher, A. Schliep, S. Schneckener, A. Schönhuth, D. Schomburg, and R. Schrader

ProClust: improved clustering of protein sequences with an extended graph-based approach
Bioinformatics 2002 18: S182-S191; doi:10.1093/bioinformatics/18.suppl_2.S182 [Abstract] [Print PDF][Screen PDF]  

Julia V. Ponomarenko, Philip E. Bourne, and Ilya N. Shindyalov

Building an automated classification of DNA-binding protein domains
Bioinformatics 2002 18: S192-S201; doi:10.1093/bioinformatics/18.suppl_2.S192 [Abstract] [Print PDF][Screen PDF]  

J. Rung, T. Schlitt, A. Brazma, K. Freivalds, and J. Vilo

Building and analysing genome-wide gene disruption networks
Bioinformatics 2002 18: S202-S210; doi:10.1093/bioinformatics/18.suppl_2.S202 [Abstract] [Print PDF][Screen PDF]  

Marko Salmenkivi, Juha Kere, and Heikki Mannila

Genome segmentation using piecewise constant intensity models and reversible jump MCMC
Bioinformatics 2002 18: S211-S218; doi:10.1093/bioinformatics/18.suppl_2.S211 [Abstract] [Print PDF][Screen PDF]  

M. Sirava, T. Schäfer, M. Eiglsperger, M. Kaufmann, O. Kohlbacher, E. Bornberg-Bauer, and H. P. Lenhof

BioMiner—modeling, analyzing, and visualizing biochemical pathways and networks
Bioinformatics 2002 18: S219-S230; doi:10.1093/bioinformatics/18.suppl_2.S219 [Abstract] [Print PDF][Screen PDF]  

R. Steuer, J. Kurths, C. O. Daub, J. Weise, and J. Selbig

The mutual information: Detecting and evaluating dependencies between variables
Bioinformatics 2002 18: S231-S240; doi:10.1093/bioinformatics/18.suppl_2.S231 [Abstract] [Print PDF][Screen PDF]  

Janet Taylor, Ross D. King, Thomas Altmann, and Oliver Fiehn

Application of metabolomics to plant genotype discrimination using statistics and machine learning
Bioinformatics 2002 18: S241-S248; doi:10.1093/bioinformatics/18.suppl_2.S241 [Abstract] [Print PDF][Screen PDF]  

Sarah A. Teichmann

Principles of protein-protein interactions
Bioinformatics 2002 18: S249; doi:10.1093/bioinformatics/18.suppl_2.S249 [Abstract] [Print PDF][Screen PDF]  

J. Waldispühl, B. Behzadi, and J.-M. Steyaert

An approximate matching algorithm for finding (sub-)optimal sequences in S-attributed grammars
Bioinformatics 2002 18: S250-S259; doi:10.1093/bioinformatics/18.suppl_2.S250 [Abstract] [Print PDF][Screen PDF]  

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