Bioinformatics

EDITORIAL:

Chris Sander

Growth in Bioinformatics
Bioinformatics 2003 19: 1; doi:10.1093/bioinformatics/19.1.1 [Print PDF][Screen PDF] [Request Permissions]  

REVIEWS:

Pietro Liò

Wavelets in bioinformatics and computational biology: state of art and perspectives
Bioinformatics 2003 19: 2-9; doi:10.1093/bioinformatics/19.1.2 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

DISCOVERY NOTES:

K. V. Krishna Mohan and C. D. Atreya

Novel organelle-targeting signals in viral proteins
Bioinformatics 2003 19: 10-13; doi:10.1093/bioinformatics/19.1.10 [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Ji-Hong Zhang, Ling-Yun Wu, and Xiang-Sun Zhang

Reconstruction of DNA sequencing by hybridization
Bioinformatics 2003 19: 14-21; doi:10.1093/bioinformatics/19.1.14 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Hasan H. Otu and Khalid Sayood

A divide-and-conquer approach to fragment assembly
Bioinformatics 2003 19: 22-29; doi:10.1093/bioinformatics/19.1.22 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

João Aires-de-Sousa and Luisa Aires-de-Sousa

Representation of DNA sequences with virtual potentials and their processing by (SEQREP) Kohonen self-organizing maps
Bioinformatics 2003 19: 30-36; doi:10.1093/bioinformatics/19.1.30 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

C. H. Ooi and Patrick Tan

Genetic algorithms applied to multi-class prediction for the analysis of gene expression data
Bioinformatics 2003 19: 37-44; doi:10.1093/bioinformatics/19.1.37 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

J. M. Deutsch

Evolutionary algorithms for finding optimal gene sets in microarray prediction
Bioinformatics 2003 19: 45-52; doi:10.1093/bioinformatics/19.1.45 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Lorenz Wernisch, Sharon L. Kendall, Shamit Soneji, Andreas Wietzorrek, Tanya Parish, Jason Hinds, Philip D. Butcher, and Neil G. Stoker

Analysis of whole-genome microarray replicates using mixed models
Bioinformatics 2003 19: 53-61; doi:10.1093/bioinformatics/19.1.53 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rahul Bijlani, Yinhe Cheng, David A. Pearce, Andrew I. Brooks, and Mitsunori Ogihara

Prediction of biologically significant components from microarray data: Independently Consistent Expression Discriminator (ICED)
Bioinformatics 2003 19: 62-70; doi:10.1093/bioinformatics/19.1.62 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jinyan Li, Huiqing Liu, James R. Downing, Allen Eng-Juh Yeoh, and Limsoon Wong

Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients
Bioinformatics 2003 19: 71-78; doi:10.1093/bioinformatics/19.1.71 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Chad Creighton and Samir Hanash

Mining gene expression databases for association rules
Bioinformatics 2003 19: 79-86; doi:10.1093/bioinformatics/19.1.79 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Richard A. McIndoe, Aaron Lanzen, and Kimberly Hurtz

MADGE: scalable distributed data management software for cDNA microarrays
Bioinformatics 2003 19: 87-89; doi:10.1093/bioinformatics/19.1.87 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kyeong Eun Lee, Naijun Sha, Edward R. Dougherty, Marina Vannucci, and Bani K. Mallick

Gene selection: a Bayesian variable selection approach
Bioinformatics 2003 19: 90-97; doi:10.1093/bioinformatics/19.1.90 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sorin Draghici and R. Brian Potter

Predicting HIV drug resistance with neural networks
Bioinformatics 2003 19: 98-107; doi:10.1093/bioinformatics/19.1.98 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

O. Perriquet, H. Touzet, and M. Dauchet

Finding the common structure shared by two homologous RNAs
Bioinformatics 2003 19: 108-116; doi:10.1093/bioinformatics/19.1.108 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jacek Leluk, Leszek Konieczny, and Irena Roterman

Search for structural similarity in proteins
Bioinformatics 2003 19: 117-124; doi:10.1093/bioinformatics/19.1.117 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Joel R. Bock and David A. Gough

Whole-proteome interaction mining
Bioinformatics 2003 19: 125-134; doi:10.1093/bioinformatics/19.1.125 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

R. Gaizauskas, G. Demetriou, P. J. Artymiuk, and P. Willett

Protein Structures and Information Extraction from Biological Texts: The PASTA System
Bioinformatics 2003 19: 135-143; doi:10.1093/bioinformatics/19.1.135 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

C. Carleos, F. Rodriguez, H. Lamelas, and J.A. Baro

Simulating complex traits influenced by genes with fuzzy-valued effects in pedigreed populations
Bioinformatics 2003 19: 144-148; doi:10.1093/bioinformatics/19.1.144 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

S. Purcell, S. S. Cherny, and P. C. Sham

Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits
Bioinformatics 2003 19: 149-150; doi:10.1093/bioinformatics/19.1.149 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yaw-Ling Lin, Xiaoqiu Huang, Tao Jiang, and Kun-Mao Chao

MAVG: locating non-overlapping maximum average segments in a given sequence
Bioinformatics 2003 19: 151-152; doi:10.1093/bioinformatics/19.1.151 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

T. De Oliveira, R. Miller, M. Tarin, and S. Cassol

An integrated genetic data environment (GDE)-based LINUX interface for analysis of HIV-1 and other microbial sequences
Bioinformatics 2003 19: 153-154; doi:10.1093/bioinformatics/19.1.153 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jianhua Zhang, Vincent Carey, and Robert Gentleman

An extensible application for assembling annotation for genomic data
Bioinformatics 2003 19: 155-156; doi:10.1093/bioinformatics/19.1.155 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ramswamy Anbazhagan

Microarray data assembler
Bioinformatics 2003 19: 157-158; doi:10.1093/bioinformatics/19.1.157 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Gopalan Vivek, Tin Wee Tan, and Shoba Ranganathan

XdomView: protein domain and exon position visualization
Bioinformatics 2003 19: 159-160; doi:10.1093/bioinformatics/19.1.159 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Patrick Aloy and Robert B. Russell

InterPreTS: protein Interaction Prediction through Tertiary Structure
Bioinformatics 2003 19: 161-162; doi:10.1093/bioinformatics/19.1.161 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Fabian Glaser, Tal Pupko, Inbal Paz, Rachel E. Bell, Dalit Bechor-Shental, Eric Martz, and Nir Ben-Tal

ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information
Bioinformatics 2003 19: 163-164; doi:10.1093/bioinformatics/19.1.163 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Marti-Renom, Linda McMahan, and Andrej Sali

ModView, visualization of multiple protein sequences and structures
Bioinformatics 2003 19: 165-166; doi:10.1093/bioinformatics/19.1.165 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Tejasvini Prasad, M. N. Prathima, and Nagasuma Chandra

Detection of hydrogen-bond signature patterns in protein families
Bioinformatics 2003 19: 167-168; doi:10.1093/bioinformatics/19.1.167 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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