Bioinformatics

PTC (2000/2001) PAPERS:

C. Helma and S. Kramer

A survey of the Predictive Toxicology Challenge 2000–2001
Bioinformatics 2003 19: 1179-1182; doi:10.1093/bioinformatics/btg084 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Hannu Toivonen, Ashwin Srinivasan, Ross D. King, Stefan Kramer, and Christoph Helma

Statistical evaluation of the Predictive Toxicology Challenge 2000–2001
Bioinformatics 2003 19: 1183-1193; doi:10.1093/bioinformatics/btg130 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Romualdo Benigni and Alessandro Giuliani

Putting the Predictive Toxicology Challenge into perspective: reflections on the results
Bioinformatics 2003 19: 1194-1200; doi:10.1093/bioinformatics/btg099 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

V. G. Blinova, D. A. Dobrynin, V. K. Finn, S. O. Kuznetsov, and E. S. Pankratova

Toxicology analysis by means of the JSM-method
Bioinformatics 2003 19: 1201-1207; doi:10.1093/bioinformatics/btg096 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Takashi Okada

Characteristic substructures and properties in chemical carcinogens studied by the cascade model
Bioinformatics 2003 19: 1208-1215; doi:10.1093/bioinformatics/btg129 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

DISCOVERY NOTES:

Mario Albrecht and Thomas Lengauer

Pyranose oxidase identified as a member of the GMC oxidoreductase family
Bioinformatics 2003 19: 1216-1220; doi:10.1093/bioinformatics/btg140 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Ketil Malde, Eivind Coward, and Inge Jonassen

Fast sequence clustering using a suffix array algorithm
Bioinformatics 2003 19: 1221-1226; doi:10.1093/bioinformatics/btg138 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Joseph Bockhorst, Mark Craven, David Page, Jude Shavlik, and Jeremy Glasner

A Bayesian network approach to operon prediction
Bioinformatics 2003 19: 1227-1235; doi:10.1093/bioinformatics/btg147 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Stan Pounds and Stephan W. Morris

Estimating the occurrence of false positives and false negatives in microarray studies by approximating and partitioning the empirical distribution of p-values
Bioinformatics 2003 19: 1236-1242; doi:10.1093/bioinformatics/btg148 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Minghe Sun and Momiao Xiong

A mathematical programming approach for gene selection and tissue classification
Bioinformatics 2003 19: 1243-1251; doi:10.1093/bioinformatics/btg145 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Efstathia Bura and Ruth M. Pfeiffer

Graphical methods for class prediction using dimension reduction techniques on DNA microarray data
Bioinformatics 2003 19: 1252-1258; doi:10.1093/bioinformatics/btg150 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Chris H.Q. Ding

Unsupervised feature selection via two-way ordering in gene expression analysis
Bioinformatics 2003 19: 1259-1266; doi:10.1093/bioinformatics/btg149 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

An-Suei Yang and Lu-yong Wang

Local structure prediction with local structure-based sequence profiles
Bioinformatics 2003 19: 1267-1274; doi:10.1093/bioinformatics/btg151 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

P. W. Lord, R. D. Stevens, A. Brass, and C. A. Goble

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
Bioinformatics 2003 19: 1275-1283; doi:10.1093/bioinformatics/btg153 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ronghui Xu and Xiaochun Li

A comparison of parametric versus permutation methods with applications to general and temporal microarray gene expression data
Bioinformatics 2003 19: 1284-1289; doi:10.1093/bioinformatics/btg155 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Richard A. Lee, Moe Razaz, and Steven Hayward

The DynDom database of protein domain motions
Bioinformatics 2003 19: 1290-1291; doi:10.1093/bioinformatics/btg137 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

James E. Johnson, Martina V. Stromvik, Kevin A.T. Silverstein, John A. Crow, Elizabeth Shoop, and Ernest F. Retzel

TableView: portable genomic data visualization
Bioinformatics 2003 19: 1292-1293; doi:10.1093/bioinformatics/btg136 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Lloyd Allison

Longest biased interval and longest non-negative sum interval
Bioinformatics 2003 19: 1294-1295; doi:10.1093/bioinformatics/btg135 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, and B. F. Francis Ouellette

GeneComber: combining outputs of gene prediction programs for improved results
Bioinformatics 2003 19: 1296-1297; doi:10.1093/bioinformatics/btg139 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

James A. R. Dalton, Ioannis Michalopoulos, and David R. Westhead

Calculation of helix packing angles in protein structures
Bioinformatics 2003 19: 1298-1299; doi:10.1093/bioinformatics/btg141 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kun Zhang and Li Jin

HaploBlockFinder: haplotype block analyses
Bioinformatics 2003 19: 1300-1301; doi:10.1093/bioinformatics/btg142 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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