Bioinformatics -- Table of Contents (19 [2])

Oxford Journals

Receive this page by email each issue: [Sign up for eTOCs]

Contents: Volume 19, Number 2, January 22 2003   [Index by Author]      Other Issues:

       DISCOVERY NOTES

       ORIGINAL PAPERS

       APPLICATIONS NOTES

Find articles in this issue containing these words:
[Search ALL Issues]

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

DISCOVERY NOTES:

Akhilesh Pandey, Suraj Peri, Colin Thacker, Chery A. Whipple, John J. Collins, and Matthias Mann: Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome
Bioinformatics 2003 19: 169-172; doi:10.1093/bioinformatics/19.2.169 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

ORIGINAL PAPERS:

D. Solle, D. Geissler, E. Stärk, T. Scheper, and B. Hitzmann: Chemometric Modelling based on 2D-Fluorescence Spectra without a Calibration Measurement
Bioinformatics 2003 19: 173-177; doi:10.1093/bioinformatics/19.2.173 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Felix Naef, Nicholas D. Socci, and Marcelo Magnasco: A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations
Bioinformatics 2003 19: 178-184; doi:10.1093/bioinformatics/19.2.178 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

B.M. Bolstad, R.A Irizarry, M. Åstrand, and T.P. Speed: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
Bioinformatics 2003 19: 185-193; doi:10.1093/bioinformatics/19.2.185 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

C.A. Glasbey and P. Ghazal: Combinatorial image analysis of DNA microarray features
Bioinformatics 2003 19: 194-203; doi:10.1093/bioinformatics/19.2.194 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Igor Dozmorov and Michael Centola: An associative analysis of gene expression array data
Bioinformatics 2003 19: 204-211; doi:10.1093/bioinformatics/19.2.204 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Neil D. Clarke and Joshua A. Granek: Rank order metrics for quantifying the association of sequence features with gene regulation
Bioinformatics 2003 19: 212-218; doi:10.1093/bioinformatics/19.2.212 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jakob Skou Pedersen and Jotun Hein: Gene finding with a hidden Markov model of genome structure and evolution
Bioinformatics 2003 19: 219-227; doi:10.1093/bioinformatics/19.2.219 [Abstract] [Print PDF][Screen PDF] Supplementary data [Request Permissions]

Xiaoqiu Huang and Kun-Mao Chao: A generalized global alignment algorithm
Bioinformatics 2003 19: 228-233; doi:10.1093/bioinformatics/19.2.228 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jack Cao, Rosemarie Panetta, Shiyi Yue, Alain Steyaert, Michele Young-Bellido, and Sultan Ahmad: A naive Bayes model to predict coupling between seven transmembrane domain receptors and G-proteins
Bioinformatics 2003 19: 234-240; doi:10.1093/bioinformatics/19.2.234 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Iwei Yeh, Peter D. Karp, Natalya F. Noy, and Russ B. Altman: Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
Bioinformatics 2003 19: 241-248; doi:10.1093/bioinformatics/19.2.241 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Gregory P. Harhay and John W. Keele: Positional candidate gene selection from livestock EST databases using Gene Ontology
Bioinformatics 2003 19: 249-255; doi:10.1093/bioinformatics/19.2.249 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Myung-Hoon Chung, Chul Koo Kim, and Kyun Nahm: Fractional populations in multiple gene inheritance
Bioinformatics 2003 19: 256-260; doi:10.1093/bioinformatics/19.2.256 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Steffen Klamt, Jörg Stelling, Martin Ginkel, and Ernst Dieter Gilles: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps
Bioinformatics 2003 19: 261-269; doi:10.1093/bioinformatics/19.2.261 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Hongwu Ma and An-Ping Zeng: Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
Bioinformatics 2003 19: 270-277; doi:10.1093/bioinformatics/19.2.270 [Abstract] [Print PDF][Screen PDF] Supplementary data [Request Permissions]

Peter Ernst, Karl-Heinz Glatting, and Sándor Suhai: A task framework for the web interface W2H
Bioinformatics 2003 19: 278-282; doi:10.1093/bioinformatics/19.2.278 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

APPLICATIONS NOTES:

Felix Kokocinski, Gunnar Wrobel, Meinhard Hahn, and Peter Lichter: QuickLIMS: facilitating the data management for DNA-microarray fabrication
Bioinformatics 2003 19: 283-284; doi:10.1093/bioinformatics/19.2.283 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Ming-Hua Hsieh, Wei-Che Hsu, Sung-Kay Chiu, and Chi-Meng Tzeng: An efficient algorithm for minimal primer set selection
Bioinformatics 2003 19: 285-286; doi:10.1093/bioinformatics/19.2.285 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Xiayi Ke and Lon R. Cardon: Efficient selective screening of haplotype tag SNPs
Bioinformatics 2003 19: 287-288; doi:10.1093/bioinformatics/19.2.287 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

David Posada and Carsten Wiuf: Simulating haplotype blocks in the human genome
Bioinformatics 2003 19: 289-290; doi:10.1093/bioinformatics/19.2.289 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jeremy M.R. Martin, lan J. Mackay, and Christopher J. Rawlings: Pedstrip: extracting a maximal subset of available, unrelated individuals from a pedigree
Bioinformatics 2003 19: 291-292; doi:10.1093/bioinformatics/19.2.291 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Yihua Zhou and Jingdong Liu: AVA: visual analysis of gene expression microarray data
Bioinformatics 2003 19: 293-294; doi:10.1093/bioinformatics/19.2.293 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Paul Pavlidis and William Stafford Noble: Matrix2png: a utility for visualizing matrix data
Bioinformatics 2003 19: 295-296; doi:10.1093/bioinformatics/19.2.295 [Abstract] [Print PDF][Screen PDF] Supplementary data [Request Permissions]

Lusheng Wang and Ying Xu: SEGID: Identifying Interesting Segments in (Multiple) Sequence Alignments
Bioinformatics 2003 19: 297-298; doi:10.1093/bioinformatics/19.2.297 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Peter De Rijk, Jan Wuyts, and Rupert De Wachter: RnaViz 2: an improved representation of RNA secondary structure
Bioinformatics 2003 19: 299-300; doi:10.1093/bioinformatics/19.2.299 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Michael J. Sanderson: r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
Bioinformatics 2003 19: 301-302; doi:10.1093/bioinformatics/19.2.301 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jack A.M. Leunissen: Chimera: construction of chimeric sequences for phylogenetic analysis
Bioinformatics 2003 19: 303-304; doi:10.1093/bioinformatics/19.2.303 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

K. Arakawa, K. Mori, K. Ikeda, T. Matsuzaki, Y. Kobayashi, and M. Tomita: G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining
Bioinformatics 2003 19: 305-306; doi:10.1093/bioinformatics/19.2.305 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Zemin Zhang and William I. Wood: A profile hidden Markov model for signal peptides generated by HMMER
Bioinformatics 2003 19: 307-308; doi:10.1093/bioinformatics/19.2.307 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Kunde Ramamoorthy Govindarajan, Pandjassarame Kangueane, Tin Wee Tan, and Shoba Ranganathan: MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules
Bioinformatics 2003 19: 309-310; doi:10.1093/bioinformatics/19.2.309 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Charles S. Bond: TopDraw: a sketchpad for protein structure topology cartoons
Bioinformatics 2003 19: 311-312; doi:10.1093/bioinformatics/19.2.311 [Abstract] [Print PDF][Screen PDF] Supplementary data [Request Permissions]

Alessandro Pintar, Oliviero Carugo, and Sándor Pongor: DPX: for the analysis of the protein core
Bioinformatics 2003 19: 313-314; doi:10.1093/bioinformatics/19.2.313 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jens P. Linge, Michael Habeck, Wolfgang Rieping, and Michael Nilges: ARIA: automated NOE assignment and NMR structure calculation
Bioinformatics 2003 19: 315-316; doi:10.1093/bioinformatics/19.2.315 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Byong-Hyon Ju, Byungkyu Park, Jong H. Park, and Kyungsook Han: Visualization and analysis of protein interactions
Bioinformatics 2003 19: 317-318; doi:10.1093/bioinformatics/19.2.317 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Online ISSN 1460-2059 - Print ISSN 1367-4803

Oxford Journals Oxford University Press