Bioinformatics

ORIGINAL PAPERS:

Michael D. Stern, Sergey V. Anisimov, and Kenneth R. Boheler

Can transcriptome size be estimated from SAGE catalogs?
Bioinformatics 2003 19: 443-448; doi:10.1093/bioinformatics/btg018 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jyotsna Kasturi, Raj Acharya, and Murali Ramanathan

An information theoretic approach for analyzing temporal patterns of gene expression
Bioinformatics 2003 19: 449-458; doi:10.1093/bioinformatics/btg020 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Susmita Datta and Somnath Datta

Comparisons and validation of statistical clustering techniques for microarray gene expression data
Bioinformatics 2003 19: 459-466; doi:10.1093/bioinformatics/btg025 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Daniel Johansson, Petter Lindgren, and Anders Berglund

A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription
Bioinformatics 2003 19: 467-473; doi:10.1093/bioinformatics/btg017 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yihui Luan and Hongzhe Li

Clustering of time-course gene expression data using a mixed-effects model with B-splines
Bioinformatics 2003 19: 474-482; doi:10.1093/bioinformatics/btg014 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Lee Makowski and Alexei Soares

Estimating the diversity of peptide populations from limited sequence data
Bioinformatics 2003 19: 483-489; doi:10.1093/bioinformatics/btg013 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Dirk Metzler

Statistical alignment based on fragment insertion and deletion models
Bioinformatics 2003 19: 490-499; doi:10.1093/bioinformatics/btg026 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, and Rita Casadio

MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments
Bioinformatics 2003 19: 500-505; doi:10.1093/bioinformatics/btg023 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mounir Errami, Christophe Geourjon, and Gilbert Deléage

Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures
Bioinformatics 2003 19: 506-512; doi:10.1093/bioinformatics/btg016 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Susana Vinga and Jonas Almeida

Alignment-free sequence comparison—a review
Bioinformatics 2003 19: 513-523; doi:10.1093/bioinformatics/btg005 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

M. Hucka, A. Finney, H. M. Sauro, H. Bolouri, J. C. Doyle, H. Kitano, and the rest of the SBML Forum:, A. P. Arkin, B. J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles, M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley, T. C. Hodgman, J.-H. Hofmeyr, P. J. Hunter, N. S. Juty, J. L. Kasberger, A. Kremling, U. Kummer, N. Le Novère, L. M. Loew, D. Lucio, P. Mendes, E. Minch, E. D. Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, J. C. Schaff, B. E. Shapiro, T. S. Shimizu, H. D. Spence, J. Stelling, K. Takahashi, M. Tomita, J. Wagner, and J. Wang

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
Bioinformatics 2003 19: 524-531; doi:10.1093/bioinformatics/btg015 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Petter Holme, Mikael Huss, and Hawoong Jeong

Subnetwork hierarchies of biochemical pathways
Bioinformatics 2003 19: 532-538; doi:10.1093/bioinformatics/btg033 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Stephen Wooding

PopHist: inferring population history from the spectrum of allele frequencies
Bioinformatics 2003 19: 539-540; doi:10.1093/bioinformatics/btg024 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Steven P. Bennett, Craig G. Nevill-Manning, and Douglas L. Brutlag

3MOTIF: visualizing conserved protein sequence motifs in the protein structure database
Bioinformatics 2003 19: 541-542; doi:10.1093/bioinformatics/btf862 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Endre Barta, László Kaján, and Sándor Pongor

IS: a web-site for intron statistics
Bioinformatics 2003 19: 543; doi:10.1093/bioinformatics/btg019 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jason M. Johnson, Keith Mason, Ciamac Moallemi, Hualin Xi, Shyamal Somaroo, and Enoch S. Huang

Protein family annotation in a multiple alignment viewer
Bioinformatics 2003 19: 544-545; doi:10.1093/bioinformatics/btg021 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rodrigo Lopez, Stephen Robinson, Asif Kibria, Nicola Harte, Gulam Patel, Rob Harper, Emmanuel Quevillon, Ville Silventoinen, Kimmo Kallio, and Petteri Jokinen

The European Bioinformatics Institute web site: a new view
Bioinformatics 2003 19: 546-547; doi:10.1093/bioinformatics/btg022 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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