Bioinformatics

EDITORIAL:

D. Curtis Jamison

Open Bioinformatics
Bioinformatics 2003 19: 679-680; doi:10.1093/bioinformatics/btg214 [Print PDF][Screen PDF] [Request Permissions]  

DISCOVERY NOTES:

Subbaya Subramanian, Rakesh K. Mishra, and Lalji Singh

Genome-wide analysis of Bkm sequences (GATA repeats): predominant association with sex chromosomes and potential role in higher order chromatin organization and function
Bioinformatics 2003 19: 681-685; doi:10.1093/bioinformatics/btg067 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Michael LeBlanc, Charles Kooperberg, Thomas M. Grogan, and Thomas P. Miller

Directed indices for exploring gene expression data
Bioinformatics 2003 19: 686-693; doi:10.1093/bioinformatics/btg079 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Taesung Park, Sung-Gon Yi, Seungmook Lee, Seung Yeoun Lee, Dong-Hyun Yoo, Jun-Ik Ahn, and Yong-Sung Lee

Statistical tests for identifying differentially expressed genes in time-course microarray experiments
Bioinformatics 2003 19: 694-703; doi:10.1093/bioinformatics/btg068 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Atsushi Kajita, Masayuki Yamamura, and Yuji Kohara

Computer simulation of the cellular arrangement using physical model in early cleavage of the nematode Caenorhabditis elegans
Bioinformatics 2003 19: 704-716; doi:10.1093/bioinformatics/btg069 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vassilis Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, and Christos A. Ouzounis

Evaluation of annotation strategies using an entire genome sequence
Bioinformatics 2003 19: 717-726; doi:10.1093/bioinformatics/btg077 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Michael I. Sadowski and John Howard Parish

Automated generation and refinement of protein signatures: case study with G-protein coupled receptors
Bioinformatics 2003 19: 727-734; doi:10.1093/bioinformatics/btg075 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Edward S.C. Shih and Ming-Jing Hwang

Protein structure comparison by probability-based matching of secondary structure elements
Bioinformatics 2003 19: 735-741; doi:10.1093/bioinformatics/btg058 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yuzhen Ye, Lukasz Jaroszewski, Weizhong Li, and Adam Godzik

A segment alignment approach to protein comparison
Bioinformatics 2003 19: 742-749; doi:10.1093/bioinformatics/btg073 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Elisabeth R.M. Tillier and Thomas W.H. Lui

Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments
Bioinformatics 2003 19: 750-755; doi:10.1093/bioinformatics/btg072 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rintaro Saito, Harukazu Suzuki, and Yoshihide Hayashizaki

Construction of reliable protein–protein interaction networks with a new interaction generality measure
Bioinformatics 2003 19: 756-763; doi:10.1093/bioinformatics/btg070 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jason Weston, Fernando Pérez-Cruz, Olivier Bousquet, Olivier Chapelle, André Elisseeff, and Bernhard Schölkopf

Feature selection and transduction for prediction of molecular bioactivity for drug design
Bioinformatics 2003 19: 764-771; doi:10.1093/bioinformatics/btg054 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Alexander Sturn, Bernhard Mlecnik, Roland Pieler, Johannes Rainer, Thomas Truskaller, and Zlatko Trajanoski

Client–Server environment for high-performance gene expression data analysis
Bioinformatics 2003 19: 772-773; doi:10.1093/bioinformatics/btg074 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

M. Masseroli, P. Cerveri, P.G. Pelicci, and M. Alcalay

GAAS: Gene Array Analyzer Software for management, analysis and visualization of gene expression data
Bioinformatics 2003 19: 774-775; doi:10.1093/bioinformatics/btg071 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Stephane Rombauts, Yves Van de Peer, and Pierre Rouzé

AFLPinSilico, simulating AFLP fingerprints
Bioinformatics 2003 19: 776-777; doi:10.1093/bioinformatics/btg090 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kyungjoon Lee, Isaac S. Kohane, and Atul J. Butte

PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications
Bioinformatics 2003 19: 778-779; doi:10.1093/bioinformatics/btg066 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ren Hua Chung and Dan Gusfield

Perfect phylogeny haplotyper: haplotype inferral using a tree model
Bioinformatics 2003 19: 780-781; doi:10.1093/bioinformatics/btg078 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Philip Wong, Grigory Kolesov, Dmitrij Frishman, and Walid A. Houry

Phylogenetic Web Profiler
Bioinformatics 2003 19: 782-783; doi:10.1093/bioinformatics/btg064 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Klaus Reichard and Michael Kaufmann

EPPS: mining the COG database by an extended phylogenetic patterns search
Bioinformatics 2003 19: 784-785; doi:10.1093/bioinformatics/btg089 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Elmar Trost, Hubert Hackl, Michael Maurer, and Zlatko Trajanoski

Java editor for biological pathways
Bioinformatics 2003 19: 786-787; doi:10.1093/bioinformatics/btg052 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Gabriel F. Berriz, James V. White, Oliver D. King, and Frederick P. Roth

GoFish finds genes with combinations of Gene Ontology attributes
Bioinformatics 2003 19: 788-789; doi:10.1093/bioinformatics/btg088 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Polixeni Dimitropoulou and Chris Cannings

RECSIM and INDSTATS: probabilities of identity in general genealogies
Bioinformatics 2003 19: 790-791; doi:10.1093/bioinformatics/btg060 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

R. Matthiesen, M. Lundsgaard, K.G. Welinder, and G. Bauw

Interpreting peptide mass spectra by VEMS
Bioinformatics 2003 19: 792-793; doi:10.1093/bioinformatics/btg059 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.