Bioinformatics

EDITORIAL:

Alfonso Valencia

META, META^N AND CYBER SERVERS
Bioinformatics 2003 19: 795; doi:10.1093/bioinformatics/btg215 [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Xiaowei Wang and Brian Seed

Selection of oligonucleotide probes for protein coding sequences
Bioinformatics 2003 19: 796-802; doi:10.1093/bioinformatics/btg086 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

K. Dobbin, J. H. Shih, and R. Simon

Statistical design of reverse dye microarrays
Bioinformatics 2003 19: 803-810; doi:10.1093/bioinformatics/btg076 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Wuju Li, Ming Fan, and Momiao Xiong

SamCluster: an integrated scheme for automatic discovery of sample classes using gene expression profile
Bioinformatics 2003 19: 811-817; doi:10.1093/bioinformatics/btg095 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

David R. Bickel

Robust cluster analysis of microarray gene expression data with the number of clusters determined biologically
Bioinformatics 2003 19: 818-824; doi:10.1093/bioinformatics/btg092 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

David Edwards

Non-linear normalization and background correction in one-channel cDNA microarray studies
Bioinformatics 2003 19: 825-833; doi:10.1093/bioinformatics/btg083 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Shyamal D. Peddada, Edward K. Lobenhofer, Leping Li, Cynthia A. Afshari, Clarice R. Weinberg, and David M. Umbach

Gene selection and clustering for time-course and dose–response microarray experiments using order-restricted inference
Bioinformatics 2003 19: 834-841; doi:10.1093/bioinformatics/btg093 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Paul M. Magwene, Paul Lizardi, and Junhyong Kim

Reconstructing the temporal ordering of biological samples using microarray data
Bioinformatics 2003 19: 842-850; doi:10.1093/bioinformatics/btg081 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

V. Braun, R. B. R. Azevedo, M. Gumbel, P.-M. Agapow, A. M. Leroi, and H.-P. Meinzer

ALES: cell lineage analysis and mapping of developmental events
Bioinformatics 2003 19: 851-858; doi:10.1093/bioinformatics/btg087 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mark Hoebeke, Pierre Nicolas, and Philippe Bessières

MuGeN: simultaneous exploration of multiple genomes and computer analysis results
Bioinformatics 2003 19: 859-864; doi:10.1093/bioinformatics/btg101 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sverker Edvardsson, Paul P. Gardner, Anthony M. Poole, Michael D. Hendy, David Penny, and Vincent Moulton

A search for H/ACA snoRNAs in yeast using MFE secondary structure prediction
Bioinformatics 2003 19: 865-873; doi:10.1093/bioinformatics/btg080 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Liam J. McGuffin and David T. Jones

Improvement of the GenTHREADER method for genomic fold recognition
Bioinformatics 2003 19: 874-881; doi:10.1093/bioinformatics/btg097 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Oscar Sverud and Robert M. MacCallum

Towards optimal views of proteins
Bioinformatics 2003 19: 882-888; doi:10.1093/bioinformatics/btg100 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Karl W. Broman, Hao Wu, Saunak Sen, and Gary A. Churchill

R/qtl: QTL mapping in experimental crosses
Bioinformatics 2003 19: 889-890; doi:10.1093/bioinformatics/btg112 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Cristian I. Castillo-Davis and Daniel L. Hartl

GeneMerge—post-genomic analysis, data mining, and hypothesis testing
Bioinformatics 2003 19: 891-892; doi:10.1093/bioinformatics/btg114 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kristof Engelen, Bert Coessens, Kathleen Marchal, and Bart De Moor

MARAN: normalizing micro-array data
Bioinformatics 2003 19: 893-894; doi:10.1093/bioinformatics/btg085 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Antonio Gómez, Nuria Domedel, Juan Cedano, Jaume Piñol, and Enrique Querol

Do current sequence analysis algorithms disclose multifunctional (moonlighting) proteins?
Bioinformatics 2003 19: 895-896; doi:10.1093/bioinformatics/btg111 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Peng Yang, Paul A. Craig, David Goodsell, and Philip E. Bourne

BioEditor—simplifying macromolecular structure annotation
Bioinformatics 2003 19: 897-898; doi:10.1093/bioinformatics/btg103 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Zsuzsanna Dosztányi, Csaba Magyar, Gábor Tusnády, and István Simon

SCide: identification of stabilization centers in proteins
Bioinformatics 2003 19: 899-900; doi:10.1093/bioinformatics/btg110 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

James M. Brundege and Christopher Dubay

BioQuery: an object framework for building queries to biomedical databases
Bioinformatics 2003 19: 901-902; doi:10.1093/bioinformatics/btg094 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Nicolas Goffard, Virginie Garcia, Florian Iragne, Alexis Groppi, and Antoine de Daruvar

IPPRED: server for proteins interactions inference
Bioinformatics 2003 19: 903-904; doi:10.1093/bioinformatics/btg091 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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