Bioinformatics

Hans-Peter Lenhof and Marie-France Sagot

ECCB 2003
Bioinformatics 2003 19: ii1-ii2; doi:10.1093/bioinformatics/btg1051 [Print PDF][Screen PDF]  

ECCB 2003 Organization
Bioinformatics 2003 19: ii3-ii4; doi:10.1093/bioinformatics/btg1087 [Print PDF][Screen PDF]  

Stein Aerts, Peter Van Loo, Gert Thijs, Yves Moreau, and Bart De Moor

Computational detection of cis -regulatory modules
Bioinformatics 2003 19: ii5-ii14; doi:10.1093/bioinformatics/btg1052 [Abstract] [Print PDF][Screen PDF]  

Hiroshi Akashi

Metabolic economics and microbial proteome evolution
Bioinformatics 2003 19: ii15; doi:10.1093/bioinformatics/btg1053 [Abstract] [Print PDF][Screen PDF]  

Timothy L. Bailey and William Stafford Noble

Searching for statistically significant regulatory modules
Bioinformatics 2003 19: ii16-ii25; doi:10.1093/bioinformatics/btg1054 [Abstract] [Print PDF][Screen PDF]  

Frédéric Boyer and Alain Viari

Ab initio reconstruction of metabolic pathways
Bioinformatics 2003 19: ii26-ii34; doi:10.1093/bioinformatics/btg1055 [Abstract] [Print PDF][Screen PDF]  

Jürgen Brosius

How significant is 98.5% ‘junk’ in mammalian genomes?
Bioinformatics 2003 19: ii35; doi:10.1093/bioinformatics/btg1056 [Abstract] [Print PDF][Screen PDF]  

Simon L. Cawley and Lior Pachter

HMM sampling and applications to gene finding and alternative splicing
Bioinformatics 2003 19: ii36-ii41; doi:10.1093/bioinformatics/btg1057 [Abstract] [Print PDF][Screen PDF]  

A. Clare and R. D. King

Predicting gene function in Saccharomyces cerevisiae
Bioinformatics 2003 19: ii42-ii49; doi:10.1093/bioinformatics/btg1058 [Abstract] [Print PDF][Screen PDF]  

C. Dieterich, R. Herwig, and M. Vingron

Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites
Bioinformatics 2003 19: ii50-ii56; doi:10.1093/bioinformatics/btg1059 [Abstract] [Print PDF][Screen PDF]  

Nir Friedman

Probabilistic models for identifying regulation networks
Bioinformatics 2003 19: ii57; doi:10.1093/bioinformatics/btg1060 [Abstract] [Print PDF][Screen PDF]  

Morihiro Hayashida, Nobuhisa Ueda, and Tatsuya Akutsu

Inferring strengths of protein-protein interactions from experimental data using linear programming
Bioinformatics 2003 19: ii58-ii65; doi:10.1093/bioinformatics/btg1061 [Abstract] [Print PDF][Screen PDF]  

Michael D. Hendy and Barbara R. Holland

Upper bounds on maximum likelihood for phylogenetic trees
Bioinformatics 2003 19: ii66-ii72; doi:10.1093/bioinformatics/btg1062 [Abstract] [Print PDF][Screen PDF]  

Yair Horesh, Amihood Amir, Shulamit Michaeli, and Ron Unger

A rapid method for detection of putative RNAi target genes in genomic data
Bioinformatics 2003 19: ii73-ii80; doi:10.1093/bioinformatics/btg1063 [Abstract] [Print PDF][Screen PDF]  

Torgeir R. Hvidsten, Andriy Kryshtafovych, Jan Komorowski, and Krzysztof Fidelis

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins
Bioinformatics 2003 19: ii81-ii91; doi:10.1093/bioinformatics/btg1064 [Abstract] [Print PDF][Screen PDF]  

Thomas Lengauer

Analyzing resistance phenomena in HIV with bioinformatics methods
Bioinformatics 2003 19: ii92; doi:10.1093/bioinformatics/btg1065 [Abstract] [Print PDF][Screen PDF]  

Jinyan Li, Huiqing Liu, See-Kiong Ng, and Limsoon Wong

Discovery of significant rules for classifying cancer diagnosis data
Bioinformatics 2003 19: ii93-ii102; doi:10.1093/bioinformatics/btg1066 [Abstract] [Print PDF][Screen PDF]  

C. Lottaz, C. Iseli, C. V. Jongeneel, and P. Bucher

Modeling sequencing errors by combining Hidden Markov models
Bioinformatics 2003 19: ii103-ii112; doi:10.1093/bioinformatics/btg1067 [Abstract] [Print PDF][Screen PDF]  

Bingwen Lu and Ting Chen

A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications
Bioinformatics 2003 19: ii113-ii121; doi:10.1093/bioinformatics/btg1068 [Abstract] [Print PDF][Screen PDF]  

Pedro Mendes, Wei Sha, and Keying Ye

Artificial gene networks for objective comparison of analysis algorithms
Bioinformatics 2003 19: ii122-ii129; doi:10.1093/bioinformatics/btg1069 [Abstract] [Print PDF][Screen PDF]  

István Miklós

MCMC genome rearrangement
Bioinformatics 2003 19: ii130-ii137; doi:10.1093/bioinformatics/btg1070 [Abstract] [Print PDF][Screen PDF]  

Bruno-Edouard Perrin, Liva Ralaivola, Aurélien Mazurie, Samuele Bottani, Jacques Mallet, and Florence d’Alché–Buc

Gene networks inference using dynamic Bayesian networks
Bioinformatics 2003 19: ii138-ii148; doi:10.1093/bioinformatics/btg1071 [Abstract] [Print PDF][Screen PDF]  

Alkes Price, Sriram Ramabhadran, and Pavel A. Pevzner

Finding subtle motifs by branching from sample strings
Bioinformatics 2003 19: ii149-ii155; doi:10.1093/bioinformatics/btg1072 [Abstract] [Print PDF][Screen PDF]  

Sven Rahmann

The shortest common supersequence problem in a microarray production setting
Bioinformatics 2003 19: ii156-ii161; doi:10.1093/bioinformatics/btg1073 [Abstract] [Print PDF][Screen PDF]  

Benjamin J. Raphael, Stanislav Volik, Colin Collins, and Pavel A. Pevzner

Reconstructing tumor genome architectures
Bioinformatics 2003 19: ii162-ii171; doi:10.1093/bioinformatics/btg1074 [Abstract] [Print PDF][Screen PDF]  

E. Remy, B. Mossé, C. Chaouiya, and D. Thieffry

A description of dynamical graphs associated to elementary regulatory circuits
Bioinformatics 2003 19: ii172-ii178; doi:10.1093/bioinformatics/btg1075 [Abstract] [Print PDF][Screen PDF]  

Yvan Saeys, Sven Degroeve, Dirk Aeyels, Yves Van de Peer, and Pierre Rouzé

Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction
Bioinformatics 2003 19: ii179-ii188; doi:10.1093/bioinformatics/btg1076 [Abstract] [Print PDF][Screen PDF]  

Michael Sammeth, Burkhard Morgenstern, and Jens Stoye

Divide-and-conquer multiple alignment with segment-based constraints
Bioinformatics 2003 19: ii189-ii195; doi:10.1093/bioinformatics/btg1077 [Abstract] [Print PDF][Screen PDF]  

Qizheng Sheng, Yves Moreau, and Bart De Moor

Biclustering microarray data by Gibbs sampling
Bioinformatics 2003 19: ii196-ii205; doi:10.1093/bioinformatics/btg1078 [Abstract] [Print PDF][Screen PDF]  

Daisuke Shinozaki, Tatsuya Akutsu, and Osamu Maruyama

Finding optimal degenerate patterns in DNA sequences
Bioinformatics 2003 19: ii206-ii214; doi:10.1093/bioinformatics/btg1079 [Abstract] [Print PDF][Screen PDF]  

Mario Stanke and Stephan Waack

Gene prediction with a hidden Markov model and a new intron submodel
Bioinformatics 2003 19: ii215-ii225; doi:10.1093/bioinformatics/btg1080 [Abstract] [Print PDF][Screen PDF]  

François Taddei

Sources of genetic and phenotypic variability
Bioinformatics 2003 19: ii226; doi:10.1093/bioinformatics/btg1081 [Abstract] [Print PDF][Screen PDF]  

Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, and Satoru Miyano

Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection
Bioinformatics 2003 19: ii227-ii236; doi:10.1093/bioinformatics/btg1082 [Abstract] [Print PDF][Screen PDF]  

Janet Thornton

The proteome and the metabolome
Bioinformatics 2003 19: ii237; doi:10.1093/bioinformatics/btg1083 [Abstract] [Print PDF][Screen PDF]  

Jean Philippe Vert and Minoru Kanehisa

Extracting active pathways from gene expression data
Bioinformatics 2003 19: ii238-ii244; doi:10.1093/bioinformatics/btg1084 [Abstract] [Print PDF][Screen PDF]  

Andy Waters

Comparative genomics of malaria parasites and its exploitation in a rodent malaria model
Bioinformatics 2003 19: ii245; doi:10.1093/bioinformatics/btg1085 [Abstract] [Print PDF][Screen PDF]  

Yuzhen Ye and Adam Godzik

Flexible structure alignment by chaining aligned fragment pairs allowing twists
Bioinformatics 2003 19: ii246-ii255; doi:10.1093/bioinformatics/btg1086 [Abstract] [Print PDF][Screen PDF]  

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