Bioinformatics

DISCOVERY NOTE:

GENOME ANALYSIS:

Get checked abstract Yi Xing and Christopher Lee

Assessing the application of Ka/Ks ratio test to alternatively spliced exons
Bioinformatics Advance Access published on August 9, 2005
Bioinformatics 2005 21: 3701-3703; doi:10.1093/bioinformatics/bti613 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS:

SEQUENCE ANALYSIS:

STRUCTURAL BIOINFORMATICS:

Get checked abstract Rui Kuang, Jason Weston, William Stafford Noble, and Christina Leslie

Motif-based protein ranking by network propagation
Bioinformatics Advance Access published on August 2, 2005
Bioinformatics 2005 21: 3711-3718; doi:10.1093/bioinformatics/bti608 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Rinaldo W. Montalvão, Richard E. Smith, Simon C. Lovell, and Tom L. Blundell

CHORAL: a differential geometry approach to the prediction of the cores of protein structures
Bioinformatics Advance Access published on July 26, 2005
Bioinformatics 2005 21: 3719-3725; doi:10.1093/bioinformatics/bti595 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION:

Get checked abstract Imola K. Fodor, David O. Nelson, Michelle Alegria-Hartman, Kristin Robbins, Richard G. Langlois, Kenneth W. Turteltaub, Todd H. Corzett, and Sandra L. McCutchen-Maloney

Statistical challenges in the analysis of two-dimensional difference gel electrophoresis experiments using DeCyder^TM
Bioinformatics Advance Access published on August 9, 2005
Bioinformatics 2005 21: 3733-3740; doi:10.1093/bioinformatics/bti612 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Fan Li and Yiming Yang

Analysis of recursive gene selection approaches from microarray data
Bioinformatics Advance Access published on August 23, 2005
Bioinformatics 2005 21: 3741-3747; doi:10.1093/bioinformatics/bti618 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Guido Sanguinetti, Marta Milo, Magnus Rattray, and Neil D. Lawrence

Accounting for probe-level noise in principal component analysis of microarray data
Bioinformatics Advance Access published on August 9, 2005
Bioinformatics 2005 21: 3748-3754; doi:10.1093/bioinformatics/bti617 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Lodewyk F. A. Wessels, Marcel J. T. Reinders, Augustinus A. M. Hart, Cor J. Veenman, Hongyue Dai, Yudong D. He, and Laura J. van't Veer

A protocol for building and evaluating predictors of disease state based on microarray data
Bioinformatics Advance Access published on April 7, 2005
Bioinformatics 2005 21: 3755-3762; doi:10.1093/bioinformatics/bti429 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Get checked abstract Weil R. Lai, Mark D. Johnson, Raju Kucherlapati, and Peter J. Park

Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
Bioinformatics Advance Access published on August 4, 2005
Bioinformatics 2005 21: 3763-3770; doi:10.1093/bioinformatics/bti611 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Sonja Zehetmayer, Peter Bauer, and Martin Posch

Two-stage designs for experiments with a large number of hypotheses
Bioinformatics Advance Access published on August 9, 2005
Bioinformatics 2005 21: 3771-3777; doi:10.1093/bioinformatics/bti604 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY:

DATABASES AND ONTOLOGIES:

Get checked abstract Xizeng Mao, Tao Cai, John G. Olyarchuk, and Liping Wei

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
Bioinformatics Advance Access published on April 7, 2005
Bioinformatics 2005 21: 3787-3793; doi:10.1093/bioinformatics/bti430 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

PHYLOGENETICS:

Get checked abstract Bui Quang Minh, Le Sy Vinh, Arndt von Haeseler, and Heiko A. Schmidt

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies
Bioinformatics Advance Access published on July 26, 2005
Bioinformatics 2005 21: 3794-3796; doi:10.1093/bioinformatics/bti594 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Geert Trooskens, David De Beule, Frederik Decouttere, and Wim Van Criekinge

Phylogenetic trees: visualizing, customizing and detecting incongruence
Bioinformatics Advance Access published on July 19, 2005
Bioinformatics 2005 21: 3801-3802; doi:10.1093/bioinformatics/bti590 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMAICS:

Get checked abstract Wei Li, Junwen Wang, and Jin-An Feng

NdPASA: a pairwise sequence alignment server for distantly related proteins
Bioinformatics Advance Access published on August 16, 2005
Bioinformatics 2005 21: 3803-3805; doi:10.1093/bioinformatics/bti619 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

Get checked abstract Leon Goldovsky, Paul Janssen, Dag Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrin-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, and Christos A. Ouzounis

CoGenT++: an extensive and extensible data environment for computational genomics
Bioinformatics 2005 21: 3806-3810; doi:10.1093/bioinformatics/bti579 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.