Bioinformatics

LETTER TO THE EDITOR

Christopher S. Carlson, Mark J. Reider, Deborah A. Nickerson, Michael A. Eberle, and Leonid Kruglyak

COMMENT ON ‘DISCREPANCIES IN dbSNP CONFIRMATIONS RATES AND ALLELE FREQUENCY DISTRIBUTIONS FROM VARYING GENOTYPING ERROR RATES AND PATTERNS’
Bioinformatics Advance Access published on August 27, 2004
Bioinformatics 2005 21: 141-143; doi:10.1093/bioinformatics/bth492 [Extract] [Full Text] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS

GENOME ANALYSIS

Get checked abstract S. M. Yiu, Prudence W. H. Wong, T.W. Lam, Y.C. Mui, H. F. Kung, Marie Lin, and Y. T. Cheung

Filtering of Ineffective siRNAs and Improved siRNA Design Tool
Bioinformatics Advance Access published on August 27, 2004
Bioinformatics 2005 21: 144-151; doi:10.1093/bioinformatics/bth498 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS

Get checked abstract Kuang Lin, Victor A. Simossis, Willam R. Taylor, and Jaap Heringa

A simple and fast secondary structure prediction method using hidden neural networks
Bioinformatics Advance Access published on September 17, 2004
Bioinformatics 2005 21: 152-159; doi:10.1093/bioinformatics/bth487 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Sung W. Shin and Sam M. Kim

A new algorithm for detecting low-complexity regions in protein sequences
Bioinformatics Advance Access published on August 27, 2004
Bioinformatics 2005 21: 160-170; doi:10.1093/bioinformatics/bth497 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION

Get checked abstract Liat Ein-Dor, Itai Kela, Gad Getz, David Givol, and Eytan Domany

Outcome signature genes in breast cancer: is there a unique set?
Bioinformatics Advance Access published on August 12, 2004
Bioinformatics 2005 21: 171-178; doi:10.1093/bioinformatics/bth469 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Hiro Takahashi, Takeshi Kobayashi, and Hiroyuki Honda

Construction of robust prognostic predictors by using projective adaptive resonance theory as a gene filtering method
Bioinformatics Advance Access published on August 12, 2004
Bioinformatics 2005 21: 179-186; doi:10.1093/bioinformatics/bth473 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Hyunsoo Kim, Gene H. Golub, and Haesun Park

Missing value estimation for DNA microarray gene expression data: local least squares imputation
Bioinformatics Advance Access published on August 27, 2004
Bioinformatics 2005 21: 187-198; doi:10.1093/bioinformatics/bth499 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY

Get checked abstract J. P. Massar, Michael Travers, Jeff Elhai, and Jeff Shrager

BioLingua: a programmable knowledge environment for biologists
Bioinformatics Advance Access published on August 12, 2004
Bioinformatics 2005 21: 199-207; doi:10.1093/bioinformatics/bth465 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract David Orrell, Stephen Ramsey, Pedro de Atauri, and Hamid Bolouri

A method for estimating stochastic noise in large genetic regulatory networks
Bioinformatics Advance Access published on August 19, 2004
Bioinformatics 2005 21: 208-217; doi:10.1093/bioinformatics/bth479 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Shawn Martin, Diana Roe, and Jean-Loup Faulon

Predicting protein–protein interactions using signature products
Bioinformatics Advance Access published on August 19, 2004
Bioinformatics 2005 21: 218-226; doi:10.1093/bioinformatics/bth483 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract S. Ott, A. Hansen, S.-Y. Kim, and S. Miyano

Superiority of network motifs over optimal networks and an application to the revelation of gene network evolution
Bioinformatics Advance Access published on September 17, 2004
Bioinformatics 2005 21: 227-238; doi:10.1093/bioinformatics/bth484 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Michele Leone and Andrea Pagnani

Predicting protein functions with message passing algorithms
Bioinformatics Advance Access published on September 17, 2004
Bioinformatics 2005 21: 239-247; doi:10.1093/bioinformatics/bth491 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING

Get checked abstract Lifeng Chen, Hongfang Liu, and Carol Friedman

Gene name ambiguity of eukaryotic nomenclatures
Bioinformatics Advance Access published on August 27, 2004
Bioinformatics 2005 21: 248-256; doi:10.1093/bioinformatics/bth496 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE

SEQUENCE ANALYSIS

Get checked abstract Sam Griffiths-Jones

RALEE—RNA ALignment Editor in Emacs
Bioinformatics Advance Access published on September 17, 2004
Bioinformatics 2005 21: 257-259; doi:10.1093/bioinformatics/bth489 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS

Get checked abstract D. P. Martin, C. Williamson, and D. Posada

RDP2: recombination detection and analysis from sequence alignments
Bioinformatics Advance Access published on September 17, 2004
Bioinformatics 2005 21: 260-262; doi:10.1093/bioinformatics/bth490 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS

Get checked abstract J. C. Barrett, B. Fry, J. Maller, and M. J. Daly

Haploview: analysis and visualization of LD and haplotype maps
Bioinformatics Advance Access published on August 5, 2004
Bioinformatics 2005 21: 263-265; doi:10.1093/bioinformatics/bth457 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Lan-Juan Zhao, Miao-Xin Li, Yan-Fang Guo, Fu-Hua Xu, Jin-Long Li, and Hong-Wen Deng

SNPP: automating large-scale SNP genotype data management
Bioinformatics Advance Access published on September 17, 2004
Bioinformatics 2005 21: 266-268; doi:10.1093/bioinformatics/bth486 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY

Get checked abstract Steven Vercruysse and Martin Kuiper

Simulating genetic networks made easy: network construction with simple building blocks
Bioinformatics Advance Access published on August 19, 2004
Bioinformatics 2005 21: 269-271; doi:10.1093/bioinformatics/bth478 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Florian Iragne, Macha Nikolski, Bertrand Mathieu, David Auber, and David Sherman

ProViz: protein interaction visualization and exploration
Bioinformatics Advance Access published on September 3, 2004
Bioinformatics 2005 21: 272-274; doi:10.1093/bioinformatics/bth494 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES

Get checked abstract A. Young, N. Whitehouse, J. Cho, and C. Shaw

OntologyTraverser: an R package for GO analysis
Bioinformatics Advance Access published on August 27, 2004
Bioinformatics 2005 21: 275-276; doi:10.1093/bioinformatics/bth495 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.