Bioinformatics

EDITORIALS:

Claire Saxby

The Bioinformatics Open Access option
Bioinformatics 2005 21: 4071-4072; doi:10.1093/bioinformatics/bti707 [Extract] [Full Text] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS:

GENOME ANALYSIS:

Get checked abstract Hanni Willenbrock and Jane Fridlyand

A comparison study: applying segmentation to array CGH data for downstream analyses
Bioinformatics Advance Access published on September 13, 2005
Bioinformatics 2005 21: 4084-4091; doi:10.1093/bioinformatics/bti677 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SEQUENCE ANALYSIS:

Get checked abstract Won-Hyong Chung, Sung-Keun Rhee, Xiu-Feng Wan, Jin-Woo Bae, Zhe-Xue Quan, and Yong-Ha Park

Design of long oligonucleotide probes for functional gene detection in a microbial community
Bioinformatics Advance Access published on September 13, 2005
Bioinformatics 2005 21: 4092-4100; doi:10.1093/bioinformatics/bti673 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Nikolaos G. Sgourakis, Pantelis G. Bagos, and Stavros J. Hamodrakas

Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks
Bioinformatics Advance Access published on September 20, 2005
Bioinformatics 2005 21: 4101-4106; doi:10.1093/bioinformatics/bti679 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Kevin Karplus, Rachel Karchin, George Shackelford, and Richard Hughey

Calibrating E-values for hidden Markov models using reverse-sequence null models
Bioinformatics Advance Access published on August 25, 2005
Bioinformatics 2005 21: 4107-4115; doi:10.1093/bioinformatics/bti629 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Tiee-Jian Wu, Ying-Hsueh Huang, and Lung-An Li

Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences
Bioinformatics Advance Access published on September 6, 2005
Bioinformatics 2005 21: 4125-4132; doi:10.1093/bioinformatics/bti658 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

STRUCTURAL BIOINFORMATICS:

Get checked abstract P. Clote, J. Waldispühl, B. Behzadi, and J.-M. Steyaert

Energy landscape of k-point mutants of an RNA molecule
Bioinformatics Advance Access published on September 13, 2005
Bioinformatics 2005 21: 4140-4147; doi:10.1093/bioinformatics/bti669 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION:

Get checked abstract Alan R. Dabney

Classification of microarrays to nearest centroids
Bioinformatics Advance Access published on September 20, 2005
Bioinformatics 2005 21: 4148-4154; doi:10.1093/bioinformatics/bti681 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Rebecka Jörnsten, Hui-Yu Wang, William J. Welsh, and Ming Ouyang

DNA microarray data imputation and significance analysis of differential expression
Bioinformatics Advance Access published on August 23, 2005
Bioinformatics 2005 21: 4155-4161; doi:10.1093/bioinformatics/bti638 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Graham J. G. Upton and Julie C. Lloyd

Oligonucleotide arrays: information from replication and spatial structure
Bioinformatics Advance Access published on September 13, 2005
Bioinformatics 2005 21: 4162-4168; doi:10.1093/bioinformatics/bti668 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Wenxuan Zhong, Peng Zeng, Ping Ma, Jun S. Liu, and Yu Zhu

RSIR: regularized sliced inverse regression for motif discovery
Bioinformatics Advance Access published on September 15, 2005
Bioinformatics 2005 21: 4169-4175; doi:10.1093/bioinformatics/bti680 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract R. Urbanczik and C. Wagner

Functional stoichiometric analysis of metabolic networks
Bioinformatics Advance Access published on September 27, 2005
Bioinformatics 2005 21: 4176-4180; doi:10.1093/bioinformatics/bti674 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATABASES AND ONTOLOGIES:

Get checked abstract Hong Xu, Simon G. Gregory, Elizabeth R. Hauser, Judith E. Stenger, Margaret A. Pericak-Vance, Jeffery M. Vance, Stephan Züchner, and Michael A. Hauser

SNPselector: a web tool for selecting SNPs for genetic association studies
Bioinformatics Advance Access published on September 22, 2005
Bioinformatics 2005 21: 4181-4186; doi:10.1093/bioinformatics/bti682 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

GENOME ANALYSIS:

Get checked abstract Richard Münch, Karsten Hiller, Andreas Grote, Maurice Scheer, Johannes Klein, Max Schobert, and Dieter Jahn

Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes
Bioinformatics Advance Access published on August 18, 2005
Bioinformatics 2005 21: 4187-4189; doi:10.1093/bioinformatics/bti635 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS:

Get checked abstract Richard J. Edwards and Denis C. Shields

BADASP: predicting functional specificity in protein families using ancestral sequences
Bioinformatics Advance Access published on September 13, 2005
Bioinformatics 2005 21: 4190-4191; doi:10.1093/bioinformatics/bti678 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION:

Get checked abstract Davide D'Alimonte, David Lowe, Ian T. Nabney, Vassilis Mersinias, and Colin P. Smith

MILVA: An interactive tool for the exploration of multidimensional microarray data
Bioinformatics Advance Access published on September 13, 2005
Bioinformatics 2005 21: 4192-4193; doi:10.1093/bioinformatics/bti676 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Laurent Jourdren and Stéphane Le Crom

Doelan: a solution for quality control monitoring of microarray production
Bioinformatics Advance Access published on September 22, 2005
Bioinformatics 2005 21: 4194-4195; doi:10.1093/bioinformatics/bti686 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Get checked abstract A. L. Mitchell, A. Divoli, J.-H. Kim, M. Hilario, I. Selimas, and T. K. Attwood

METIS: multiple extraction techniques for informative sentences
Bioinformatics Advance Access published on September 13, 2005
Bioinformatics 2005 21: 4196-4197; doi:10.1093/bioinformatics/bti675 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Erratum
Bioinformatics 2005 21: 4198; doi:10.1093/bioinformatics/bti727 [Extract] [Full Text] [Print PDF] [Request Permissions]  

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