Bioinformatics

DISCOVERY NOTE:

GENOME ANALYSIS:

Get checked abstract Alex V. Kochetov

AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 837-840; doi:10.1093/bioinformatics/bti136 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS:

Get checked abstract Matthieu Legendre, André Lambert, and Daniel Gautheret

Profile-based detection of microRNA precursors in animal genomes
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 841-845; doi:10.1093/bioinformatics/bti073 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

ORIGINAL PAPERS:

GENOME ANALYSIS:

Get checked abstract Vladimir Paar, Nenad Pavin, Marija Rosandic, Matko Gluncic, Ivan Basar, Robert Pezer, and Sonja Durajlija Zinic

ColorHOR—novel graphical algorithm for fast scan of alpha satellite higher-order repeats and HOR annotation for GenBank sequence of human genome
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 846-852; doi:10.1093/bioinformatics/bti072 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Daniela Bartels, Sebastian Kespohl, Stefan Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, and Stephan C. Schuster

BACCardI—a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 853-859; doi:10.1093/bioinformatics/bti091 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Roger M. Jarvis and Royston Goodacre

Genetic algorithm optimization for pre-processing and variable selection of spectroscopic data
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 860-868; doi:10.1093/bioinformatics/bti102 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Peng Yin and Alexander J. Hartemink

Theoretical and practical advances in genome halving
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 869-879; doi:10.1093/bioinformatics/bti107 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract B. P. Westover, J. D. Buhler, J. L. Sonnenburg, and J. I. Gordon

Operon prediction without a training set
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 880-888; doi:10.1093/bioinformatics/bti123 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Shahid H. Bokhari and Jon R. Sauer

A parallel graph decomposition algorithm for DNA sequencing with nanopores
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 889-896; doi:10.1093/bioinformatics/bti129 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Gideon Dror, Rotem Sorek, and Ron Shamir

Accurate identification of alternatively spliced exons using support vector machine
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 897-901; doi:10.1093/bioinformatics/bti132 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS:

Get checked abstract Yi-Kuo Yu and Stephen F. Altschul

The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 902-911; doi:10.1093/bioinformatics/bti070 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Masumi Itoh, Susumu Goto, Tatsuya Akutsu, and Minoru Kanehisa

Fast and accurate database homology search using upper bounds of local alignment scores
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 912-921; doi:10.1093/bioinformatics/bti076 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Chiara Sabatti, Lars Rohlin, Kenneth Lange, and James C. Liao

Vocabulon: a dictionary model approach for reconstruction and localization of transcription factor binding sites
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 922-931; doi:10.1093/bioinformatics/bti083 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract January Weiner, 3rd, Geraint Thomas, and Erich Bornberg-Bauer

Rapid motif-based prediction of circular permutations in multi-domain proteins
Bioinformatics 2005 21: 932-937; doi:10.1093/bioinformatics/bti085 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Wei-Mou Zheng

Relation between weight matrix and substitution matrix: motif search by similarity
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 938-943; doi:10.1093/bioinformatics/bti090 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Kuo-Chen Chou and Yu-Dong Cai

Predicting protein localization in budding Yeast
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 944-950; doi:10.1093/bioinformatics/bti104 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Johannes Söding

Protein homology detection by HMM–HMM comparison
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 951-960; doi:10.1093/bioinformatics/bti125 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract M. Michael Gromiha and Makiko Suwa

A simple statistical method for discriminating outer membrane proteins with better accuracy
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 961-968; doi:10.1093/bioinformatics/bti126 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS:

Get checked abstract T. M. Keane, T. J. Naughton, S. A. A. Travers, J. O. McInerney, and G. P. McCormack

DPRml: distributed phylogeny reconstruction by maximum likelihood
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 969-974; doi:10.1093/bioinformatics/bti100 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Gavin E. Crooks and Steven E. Brenner

An alternative model of amino acid replacement
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 975-980; doi:10.1093/bioinformatics/bti109 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS:

Get checked abstract Dominik Gront and Andrzej Kolinski

A new approach to prediction of short-range conformational propensities in proteins
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 981-987; doi:10.1093/bioinformatics/bti080 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract John Westbrook, Nobutoshi Ito, Haruki Nakamura, Kim Henrick, and Helen M. Berman

PDBML: the representation of archival macromolecular structure data in XML
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 988-992; doi:10.1093/bioinformatics/bti082 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Tom M. W. Nye, Carlo Berzuini, Walter R. Gilks, M. Madan Babu, and Sarah A. Teichmann

Statistical analysis of domains in interacting protein pairs
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 993-1001; doi:10.1093/bioinformatics/bti086 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Erik Sandelin

Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1002-1009; doi:10.1093/bioinformatics/bti117 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Xin Yuan and Christopher Bystroff

Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1010-1019; doi:10.1093/bioinformatics/bti128 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Ilona Kifer, Ori Sasson, and Michal Linial

Predicting fold novelty based on ProtoNet hierarchical classification
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 1020-1027; doi:10.1093/bioinformatics/bti135 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Carleton L. Kingsford, Bernard Chazelle, and Mona Singh

Solving and analyzing side-chain positioning problems using linear and integer programming
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1028-1039; doi:10.1093/bioinformatics/bti144 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION:

Get checked abstract F. R. Pinto, L. Ashley Cowart, Yusuf A. Hannun, B. Rohrer, and J. S. Almeida

Local correlation of expression profiles with gene annotations—proof of concept for a general conciliatory method
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 1037-1045; doi:10.1093/bioinformatics/bti074 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

Get checked abstract Chao Sima, Ulisses Braga-Neto, and Edward R. Dougherty

Superior feature-set ranking for small samples using bolstered error estimation
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1046-1054; doi:10.1093/bioinformatics/bti081 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Yuan Ji, Kam-Wah Tsui, and KyungMann Kim

A novel means of using gene clusters in a two-step empirical Bayes method for predicting classes of samples
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1055-1061; doi:10.1093/bioinformatics/bti092 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Hisanori Kiryu, Taku Oshima, and Kiyoshi Asai

Extracting relations between promoter sequences and their strengths from microarray data
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1062-1068; doi:10.1093/bioinformatics/bti094 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Rajarajeswari Balasubramaniyan, Eyke Hüllermeier, Nils Weskamp, and Jörg Kämper

Clustering of gene expression data using a local shape-based similarity measure
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1069-1077; doi:10.1093/bioinformatics/bti095 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract J. E. Eckel, C. Gennings, T. M. Therneau, L. D. Burgoon, D. R. Boverhof, and T. R. Zacharewski

Normalization of two-channel microarray experiments: a semiparametric approach
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1078-1083; doi:10.1093/bioinformatics/bti105 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Yee Hwa Yang, Yuanyuan Xiao, and Mark R. Segal

Identifying differentially expressed genes from microarray experiments via statistic synthesis
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1084-1093; doi:10.1093/bioinformatics/bti108 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Sébastien Rimour, David Hill, Cécile Militon, and Pierre Peyret

GoArrays: highly dynamic and efficient microarray probe design
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1094-1103; doi:10.1093/bioinformatics/bti112 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Gersende Fort and Sophie Lambert-Lacroix

Classification using partial least squares with penalized logistic regression
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1104-1111; doi:10.1093/bioinformatics/bti114 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Antonio Reverter, Wes Barris, Sean McWilliam, Keren A. Byrne, Yong H. Wang, Siok H. Tan, Nick Hudson, and Brian P. Dalrymple

Validation of alternative methods of data normalization in gene co-expression studies
Bioinformatics Advance Access published on November 25, 2004
Bioinformatics 2005 21: 1112-1120; doi:10.1093/bioinformatics/bti124 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract David R. Bickel

Probabilities of spurious connections in gene networks: application to expression time series
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1121-1128; doi:10.1093/bioinformatics/bti140 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Yoram Ben-Shaul, Hagai Bergman, and Hermona Soreq

Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression
Bioinformatics Advance Access published on November 18, 2004
Bioinformatics 2005 21: 1129-1137; doi:10.1093/bioinformatics/bti149 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Get checked abstract Sven Bilke, Qing-Rong Chen, Craig C. Whiteford, and Javed Khan

Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 1138-1145; doi:10.1093/bioinformatics/bti133 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Paul H. C. Eilers and Renée X. de Menezes

Quantile smoothing of array CGH data
Bioinformatics Advance Access published on November 30, 2004
Bioinformatics 2005 21: 1146-1153; doi:10.1093/bioinformatics/bti148 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract Shuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, and Akihiko Konagaya

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1154-1163; doi:10.1093/bioinformatics/bti071 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas S. Jensen, Peer Bork, and Søren Brunak

Comparison of computational methods for the identification of cell cycle-regulated genes
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1164-1171; doi:10.1093/bioinformatics/bti093 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract M. Kloster, C. Tang, and N.S. Wingreen

Finding regulatory modules through large-scale gene-expression data analysis
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1172-1179; doi:10.1093/bioinformatics/bti096 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Kuan-Yao Tsai and Feng-Sheng Wang

Evolutionary optimization with data collocation for reverse engineering of biological networks
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1180-1188; doi:10.1093/bioinformatics/bti099 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract S. A. Rahman, P. Advani, R. Schunk, R. Schrader, and Dietmar Schomburg

Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC)
Bioinformatics Advance Access published on November 30, 2004
Bioinformatics 2005 21: 1189-1193; doi:10.1093/bioinformatics/bti116 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Gang Liu, Mark T. Swihart, and Sriram Neelamegham

Sensitivity, principal component and flux analysis applied to signal transduction: the case of epidermal growth factor mediated signaling
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1194-1202; doi:10.1093/bioinformatics/bti118 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract R. Urbanczik and C. Wagner

An improved algorithm for stoichiometric network analysis: theory and applications
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 1203-1210; doi:10.1093/bioinformatics/bti127 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

Get checked abstract Ranadip Pal, Aniruddha Datta, Michael L. Bittner, and Edward R. Dougherty

Intervention in context-sensitive probabilistic Boolean networks
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1211-1218; doi:10.1093/bioinformatics/bti131 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Ina Koch, Björn H. Junker, and Monika Heiner

Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1219-1226; doi:10.1093/bioinformatics/bti145 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Get checked abstract Asako Koike, Yoshiki Niwa, and Toshihisa Takagi

Automatic extraction of gene/protein biological functions from biomedical text
Bioinformatics Advance Access published on October 27, 2004
Bioinformatics 2005 21: 1227-1236; doi:10.1093/bioinformatics/bti084 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

Get checked abstract Yingyao Zhou, Jason A. Young, Andrey Santrosyan, Kaisheng Chen, S. Frank Yan, and Elizabeth A. Winzeler

In silico gene function prediction using ontology-based pattern identification
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1237-1245; doi:10.1093/bioinformatics/bti111 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Julie Chabalier, Cécile Capponi, Yves Quentin, and Gwennaele Fichant

ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1246-1256; doi:10.1093/bioinformatics/bti137 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Georgios V. Gkoutos, Eain C.J. Green, Simon Greenaway, Andrew Blake, Ann-Marie Mallon, and John M. Hancock

CRAVE: a database, middleware and visualization system for phenotype ontologies
Bioinformatics Advance Access published on November 18, 2004
Bioinformatics 2005 21: 1257-1262; doi:10.1093/bioinformatics/bti147 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

GENOME ANALYSIS:

Get checked abstract Michael D. Gadberry, Simon T. Malcomber, Andrew N. Doust, and Elizabeth A. Kellogg

Primaclade—a flexible tool to find conserved PCR primers across multiple species
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 1263-1264; doi:10.1093/bioinformatics/bti134 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Jian Xu and Jeffrey I. Gordon

MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly
Bioinformatics Advance Access published on November 30, 2004
Bioinformatics 2005 21: 1265-1266; doi:10.1093/bioinformatics/bti122 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS:

Get checked abstract Ivo Van Walle, Ignace Lasters, and Lode Wyns

SABmark—a benchmark for sequence alignment that covers the entire known fold space
Bioinformatics Advance Access published on August 27, 2004
Bioinformatics 2005 21: 1267-1268; doi:10.1093/bioinformatics/bth493 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Lars Kiemer, Jannick Dyrløv Bendtsen, and Nikolaj Blom

NetAcet: prediction of N-terminal acetylation sites
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 1269-1270; doi:10.1093/bioinformatics/bti130 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, and Jan Weyer-Menkhoff

Multiple sequence alignment with user-defined constraints at GOBICS
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1271-1273; doi:10.1093/bioinformatics/bti142 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS:

Get checked abstract D. Paraskevis, K. Deforche, P. Lemey, G. Magiorkinis, A. Hatzakis, and A.-M. Vandamme

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1274-1275; doi:10.1093/bioinformatics/bti139 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS:

Get checked abstract Gábor E. Tusnády, Zsuzsanna Dosztányi, and István Simon

TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates
Bioinformatics Advance Access published on November 11, 2004
Bioinformatics 2005 21: 1276-1277; doi:10.1093/bioinformatics/bti121 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION:

Get checked abstract Victor E. Gerth and Peter D. Vize

A Java tool for dynamic web-based 3D visualization of anatomy and overlapping gene or protein expression patterns
Bioinformatics Advance Access published on November 5, 2004
Bioinformatics 2005 21: 1278-1279; doi:10.1093/bioinformatics/bti120 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Gilles Caraux and Sylvie Pinloche

PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1280-1281; doi:10.1093/bioinformatics/bti141 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Get checked abstract Bernhard Hiller, Jutta Bradtke, Harald Balz, and Harald Rieder

CyDAS: a cytogenetic data analysis system
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1282-1283; doi:10.1093/bioinformatics/bti146 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract Pawan K. Dhar, Tan Chee Meng, Sandeep Somani, Li Ye, Kishore Sakharkar, Arun Krishnan, Azmi B.M. Ridwan, Sebastian Ho Kok Wah, Mandar Chitre, and Zhu Hao

Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1284-1287; doi:10.1093/bioinformatics/bti143 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

Get checked abstract Chung-Yen Lin, Chia-Ling Chen, Chi-Shiang Cho, Li-Ming Wang, Chia-Ming Chang, Pao-Yang Chen, Chen-Zen Lo, and Chao A. Hsiung

hp-DPI: Helicobacter pylori Database of Protein Interactomes—embracing experimental and inferred interactions
Bioinformatics Advance Access published on October 28, 2004
Bioinformatics 2005 21: 1288-1290; doi:10.1093/bioinformatics/bti101 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Joachim Reichelt, Guido Dieterich, Marsel Kvesic, Dietmar Schomburg, and Dirk W. Heinz

BRAGI: linking and visualization of database information in a 3D viewer and modeling tool
Bioinformatics Advance Access published on November 16, 2004
Bioinformatics 2005 21: 1291-1293; doi:10.1093/bioinformatics/bti138 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

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