Skip Navigation

Receive this page by email each issue: [Sign up for eTOCs]

Cover Image Contents: Volume 21, Suppl 2 September 2005   [Index by Author] 
 
ECCB/JBI'05 PROCEEDINGS. Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28-October 1, 2005
Find articles in this issue containing these words:
[Search ALL Issues]

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Roderic Guigó, Federico Morán, Alfonso Valencia, and Josep F. Abril
ECCB/JBI 2005
Bioinformatics 2005 21: ii1-ii2; doi:10.1093/bioinformatics/bti1145 [Print PDF] [Request Permissions]  

ECCB/JBI 2005 Organization
Bioinformatics 2005 21: ii3-ii5; doi:10.1093/bioinformatics/bti1146 [Print PDF] [Request Permissions]  

Cigdem Demir, S. Humayun Gultekin, and Bülent Yener
Augmented cell-graphs for automated cancer diagnosis
Bioinformatics 2005 21: ii7-ii12; doi:10.1093/bioinformatics/bti1100 [Abstract] [Print PDF] [Request Permissions]  

David de Juan, Mario Mellado, José Miguel Rodríguez-Frade, Patricia Hernanz-Falcón, Antonio Serrano, Antonio del Sol, Alfonso Valencia, Carlos Martínez-A, and Ana María Rojas
A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors
Bioinformatics 2005 21: ii13-ii18; doi:10.1093/bioinformatics/bti1101 [Abstract] [Print PDF] [Supplementary Data] [Request Permissions]  

Gisele L. Pappa, Anthony J. Baines, and Alex A. Freitas
Predicting post-synaptic activity in proteins with data mining
Bioinformatics 2005 21: ii19-ii25; doi:10.1093/bioinformatics/bti1102 [Abstract] [Print PDF] [Request Permissions]  

Sònia Casillas, Natalia Petit, and Antonio Barbadilla
DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus
Bioinformatics 2005 21: ii26-ii30; doi:10.1093/bioinformatics/bti1103 [Abstract] [Print PDF] [Request Permissions]  

Myungeun Lim, Myunggeun Chung, Myungnam Bae, and Sunhee Park
Design of a description language for generating wrapper to collect biological data
Bioinformatics 2005 21: ii31-ii32; doi:10.1093/bioinformatics/bti1104 [Abstract] [Print PDF] [Request Permissions]  

Ulf Leser
A query language for biological networks
Bioinformatics 2005 21: ii33-ii39; doi:10.1093/bioinformatics/bti1105 [Abstract] [Print PDF] [Request Permissions]  

Andreas Prlic, Thomas A. Down, and Tim J. P. Hubbard
Adding Some SPICE to DAS
Bioinformatics 2005 21: ii40-ii41; doi:10.1093/bioinformatics/bti1106 [Abstract] [Print PDF] [Request Permissions]  

Roland Arnold, Thomas Rattei, Patrick Tischler, Minh-Duc Truong, Volker Stümpflen, and Werner Mewes
SIMAP—The similarity matrix of proteins
Bioinformatics 2005 21: ii42-ii46; doi:10.1093/bioinformatics/bti1107 [Abstract] [Print PDF] [Request Permissions]  

Oranit Dror, Ruth Nussinov, and Haim Wolfson
ARTS: alignment of RNA tertiary structures
Bioinformatics 2005 21: ii47-ii53; doi:10.1093/bioinformatics/bti1108 [Abstract] [Print PDF] [Request Permissions]  

Emidio Capriotti, Piero Fariselli, Remo Calabrese, and Rita Casadio
Predicting protein stability changes from sequences using support vector machines
Bioinformatics 2005 21: ii54-ii58; doi:10.1093/bioinformatics/bti1109 [Abstract] [Print PDF] [Request Permissions]  

Koji Tsuda, HyunJung Shin, and Bernhard Schölkopf
Fast protein classification with multiple networks
Bioinformatics 2005 21: ii59-ii65; doi:10.1093/bioinformatics/bti1110 [Abstract] [Print PDF] [Request Permissions]  

Joseph D. Szustakowski, Simon Kasif, and Zhiping Weng
Less is more: towards an optimal universal description of protein folds
Bioinformatics 2005 21: ii66-ii71; doi:10.1093/bioinformatics/bti1111 [Abstract] [Print PDF] [Request Permissions]  

Alejandro Giorgetti, Domenico Raimondo, Adriana Erica Miele, and Anna Tramontano
Evaluating the usefulness of protein structure models for molecular replacement
Bioinformatics 2005 21: ii72-ii76; doi:10.1093/bioinformatics/bti1112 [Abstract] [Print PDF] [Request Permissions]  

Kristin Missal, Dominic Rose, and Peter F. Stadler
Non-coding RNAs in Ciona intestinalis
Bioinformatics 2005 21: ii77-ii78; doi:10.1093/bioinformatics/bti1113 [Abstract] [Print PDF] [Request Permissions]  

Eugene W. Myers
The fragment assembly string graph
Bioinformatics 2005 21: ii79-ii85; doi:10.1093/bioinformatics/bti1114 [Abstract] [Print PDF] [Request Permissions]  

Henry C. M. Leung and Francis Y. L. Chin
Finding exact optimal motifs in matrix representation by partitioning
Bioinformatics 2005 21: ii86-ii92; doi:10.1093/bioinformatics/bti1115 [Abstract] [Print PDF] [Request Permissions]  

Sungroh Yoon and Giovanni De Micheli
Prediction of regulatory modules comprising microRNAs and target genes
Bioinformatics 2005 21: ii93-ii100; doi:10.1093/bioinformatics/bti1116 [Abstract] [Print PDF] [Request Permissions]  

Tho Hoan Pham, José Carlos Clemente, Kenji Satou, and Tu Bao Ho
Computational discovery of transcriptional regulatory rules
Bioinformatics 2005 21: ii101-ii107; doi:10.1093/bioinformatics/bti1117 [Abstract] [Print PDF] [Request Permissions]  

Sach Mukherjee, Stephen J. Roberts, and Mark J. van der Laan
Data-adaptive test statistics for microarray data
Bioinformatics 2005 21: ii108-ii114; doi:10.1093/bioinformatics/bti1119 [Abstract] [Print PDF] [Request Permissions]  

Florian Sohler and Ralf Zimmer
Identifying active transcription factors and kinases from expression data using pathway queries
Bioinformatics 2005 21: ii115-ii122; doi:10.1093/bioinformatics/bti1120 [Abstract] [Print PDF] [Request Permissions]  

Elisabeth Georgii, Lothar Richter, Ulrich Rückert, and Stefan Kramer
Analyzing microarray data using quantitative association rules
Bioinformatics 2005 21: ii123-ii129; doi:10.1093/bioinformatics/bti1121 [Abstract] [Print PDF] [Request Permissions]  

C. Vogl, F. Sanchez-Cabo, G. Stocker, S. Hubbard, O. Wolkenhauer, and Z. Trajanoski
A fully Bayesian model to cluster gene-expression profiles
Bioinformatics 2005 21: ii130-ii136; doi:10.1093/bioinformatics/bti1122 [Abstract] [Print PDF] [Supplementary Data] [Request Permissions]  

Walter R. Gilks, Brian D. M. Tom, and Alvis Brazma
Fusing microarray experiments with multivariate regression
Bioinformatics 2005 21: ii137-ii143; doi:10.1093/bioinformatics/bti1123 [Abstract] [Print PDF] [Request Permissions]  

Toni Gabaldón and Martijn A. Huynen
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes
Bioinformatics 2005 21: ii144-ii150; doi:10.1093/bioinformatics/bti1124 [Abstract] [Print PDF] [Request Permissions]  

Itay Mayrose, Nir Friedman, and Tal Pupko
A Gamma mixture model better accounts for among site rate heterogeneity
Bioinformatics 2005 21: ii151-ii158; doi:10.1093/bioinformatics/bti1125 [Abstract] [Print PDF] [Request Permissions]  

Daniel H. Huson and Tobias H. Kloepper
Computing recombination networks from binary sequences
Bioinformatics 2005 21: ii159-ii165; doi:10.1093/bioinformatics/bti1126 [Abstract] [Print PDF] [Request Permissions]  

Dirk Husmeier
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models
Bioinformatics 2005 21: ii166-ii172; doi:10.1093/bioinformatics/bti1127 [Abstract] [Print PDF] [Request Permissions]  

Mathieu Lajoie and Nadia El-Mabrouk
Recovering haplotype structure through recombination and gene conversion
Bioinformatics 2005 21: ii173-ii179; doi:10.1093/bioinformatics/bti1128 [Abstract] [Print PDF] [Request Permissions]  

Tomàs Marquès-Bonet, Oscar Lao, Robert Goertsches, Manuel Comabella, Xavier Montalban, and Arcadi Navarro
Association Cluster Detector: a tool for heuristic detection of significance clusters in whole-genome scans
Bioinformatics 2005 21: ii180-ii181; doi:10.1093/bioinformatics/bti1118 [Abstract] [Print PDF] [Request Permissions]  

Yiping Zhan and David Kulp
Model-P: a basecalling method for resequencing microarrays of diploid samples
Bioinformatics 2005 21: ii182-ii189; doi:10.1093/bioinformatics/bti1129 [Abstract] [Print PDF] [Request Permissions]  

E. Simão, E. Remy, D. Thieffry, and C. Chaouiya
Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli
Bioinformatics 2005 21: ii190-ii196; doi:10.1093/bioinformatics/bti1130 [Abstract] [Print PDF] [Request Permissions]  

Dmitriy Leyfer and Zhiping Weng
Genome-wide decoding of hierarchical modular structure of transcriptional regulation by cis-element and expression clustering
Bioinformatics 2005 21: ii197-ii203; doi:10.1093/bioinformatics/bti1131 [Abstract] [Print PDF] [Request Permissions]  

Jean-Marc Schwartz and Minoru Kanehisa
A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes
Bioinformatics 2005 21: ii204-ii205; doi:10.1093/bioinformatics/bti1132 [Abstract] [Print PDF] [Request Permissions]  

Naoki Nariai, Yoshinori Tamada, Seiya Imoto, and Satoru Miyano
Estimating gene regulatory networks and protein–protein interactions of Saccharomyces cerevisiae from multiple genome-wide data
Bioinformatics 2005 21: ii206-ii212; doi:10.1093/bioinformatics/bti1133 [Abstract] [Print PDF] [Request Permissions]  

Nam Tran, Chitta Baral, Vinay J. Nagaraj, and Lokesh Joshi
Knowledge-based framework for hypothesis formation in biochemical networks
Bioinformatics 2005 21: ii213-ii219; doi:10.1093/bioinformatics/bti1134 [Abstract] [Print PDF] [Request Permissions]  

Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto, and Thomas Lengauer
Decomposing protein networks into domain–domain interactions
Bioinformatics 2005 21: ii220-ii221; doi:10.1093/bioinformatics/bti1135 [Abstract] [Print PDF] [Supplementary Data] [Request Permissions]  

Csaba Pál, Balázs Papp, and Martin J. Lercher
Horizontal gene transfer depends on gene content of the host
Bioinformatics 2005 21: ii222-ii223; doi:10.1093/bioinformatics/bti1136 [Abstract] [Print PDF] [Request Permissions]  

J. M. Peña, J. Björkegren, and J. Tegnér
Growing Bayesian network models of gene networks from seed genes
Bioinformatics 2005 21: ii224-ii229; doi:10.1093/bioinformatics/bti1137 [Abstract] [Print PDF] [Request Permissions]  

Olga Vitek, Chris Bailey-Kellogg, Bruce Craig, Paul Kuliniewicz, and Jan Vitek
Reconsidering complete search algorithms for protein backbone NMR assignment
Bioinformatics 2005 21: ii230-ii236; doi:10.1093/bioinformatics/bti1138 [Abstract] [Print PDF] [Request Permissions]  

Kengo Sato and Yasubumi Sakakibara
RNA secondary structural alignment with conditional random fields
Bioinformatics 2005 21: ii237-ii242; doi:10.1093/bioinformatics/bti1139 [Abstract] [Print PDF] [Request Permissions]  

Sjors H.W. Scheres, Mikel Valle, and José-María Carazo
Fast maximum-likelihood refinement of electron microscopy images
Bioinformatics 2005 21: ii243-ii244; doi:10.1093/bioinformatics/bti1140 [Abstract] [Print PDF] [Request Permissions]  

Shanfeng Zhu, Yasushi Okuno, Gozoh Tsujimoto, and Hiroshi Mamitsuka
A probabilistic model for mining implicit ‘chemical compound–gene’ relations from literature
Bioinformatics 2005 21: ii245-ii251; doi:10.1093/bioinformatics/bti1141 [Abstract] [Print PDF] [Request Permissions]  

Robert Hoffmann and Alfonso Valencia
Implementing the iHOP concept for navigation of biomedical literature
Bioinformatics 2005 21: ii252-ii258; doi:10.1093/bioinformatics/bti1142 [Abstract] [Print PDF] [Supplementary Data] [Request Permissions]  

Robert Küffner, Katrin Fundel, and Ralf Zimmer
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts
Bioinformatics 2005 21: ii259-ii267; doi:10.1093/bioinformatics/bti1143 [Abstract] [Print PDF] [Request Permissions]  

Martin Szugat, Daniel Güttler, Katrin Fundel, Florian Sohler, and Ralf Zimmer
Web servicing the biological office
Bioinformatics 2005 21: ii268-ii269; doi:10.1093/bioinformatics/bti1144 [Abstract] [Print PDF] [Request Permissions]  

Author Index
Bioinformatics 2005 21: ii270; doi:10.1093/bioinformatics/bti1147 [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.