Bioinformatics

EDITORIAL NOTE:

Editorial note
Bioinformatics 2006 22: 1; doi:10.1093/bioinformatics/bti813 [Extract] [Full Text] [Print PDF] [Request Permissions]  

EDITORIALS:

Alex Bateman

Bioinformatics—The new home for protein sequence motifs
Bioinformatics 2006 22: 2; doi:10.1093/bioinformatics/bti755 [Extract] [Full Text] [Print PDF] [Request Permissions]  

DISCOVERY NOTE:

SEQUENCE ANALYSIS:

ORIGINAL PAPERS:

GENOME ANALYSIS:

SEQUENCE ANALYSIS:

Get checked abstract Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, and Gregory N. Stephanopoulos

A generic motif discovery algorithm for sequential data
Bioinformatics Advance Access published on October 27, 2005
Bioinformatics 2006 22: 21-28; doi:10.1093/bioinformatics/bti745 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Weichun Huang, David M. Umbach, and Leping Li

Accurate anchoring alignment of divergent sequences
Bioinformatics Advance Access published on November 13, 2005
Bioinformatics 2006 22: 29-34; doi:10.1093/bioinformatics/bti772 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Zasha Weinberg and Walter L. Ruzzo

Sequence-based heuristics for faster annotation of non-coding RNA families
Bioinformatics Advance Access published on November 2, 2005
Bioinformatics 2006 22: 35-39; doi:10.1093/bioinformatics/bti743 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS:

GENE EXPRESSION:

Get checked abstract Marta Blangiardo, Simona Toti, Betti Giusti, Rosanna Abbate, Alberto Magi, Filippo Poggi, Luciana Rossi, Francesca Torricelli, and Annibale Biggeri

Using a calibration experiment to assess gene-specific information: full Bayesian and empirical Bayesian models for two-channel microarray data
Bioinformatics Advance Access published on November 2, 2005
Bioinformatics 2006 22: 50-57; doi:10.1093/bioinformatics/bti750 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Thomas Grotkjær, Ole Winther, Birgitte Regenberg, Jens Nielsen, and Lars Kai Hansen

Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
Bioinformatics Advance Access published on October 27, 2005
Bioinformatics 2006 22: 58-67; doi:10.1093/bioinformatics/bti746 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Xiaoyan Leng and Hans-Georg Müller

Classification using functional data analysis for temporal gene expression data
Bioinformatics Advance Access published on October 27, 2005
Bioinformatics 2006 22: 68-76; doi:10.1093/bioinformatics/bti742 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Yongxi Tan, Leming Shi, Saber M. Hussain, Jun Xu, Weida Tong, John M. Frazier, and Charles Wang

Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium
Bioinformatics Advance Access published on October 25, 2005
Bioinformatics 2006 22: 77-87; doi:10.1093/bioinformatics/bti737 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Get checked abstract Hao Helen Zhang, Jeongyoun Ahn, Xiaodong Lin, and Cheolwoo Park

Gene selection using support vector machines with non-convex penalty
Bioinformatics Advance Access published on October 25, 2005
Bioinformatics 2006 22: 88-95; doi:10.1093/bioinformatics/bti736 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract Huai Li and Ming Zhan

Systematic intervention of transcription for identifying network response to disease and cellular phenotypes
Bioinformatics Advance Access published on November 8, 2005
Bioinformatics 2006 22: 96-102; doi:10.1093/bioinformatics/bti752 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATA AND TEXT MINING:

Get checked abstract Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, and Cathy Wu

BioThesaurus: a web-based thesaurus of protein and gene names
Bioinformatics Advance Access published on November 2, 2005
Bioinformatics 2006 22: 103-105; doi:10.1093/bioinformatics/bti749 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

Get checked abstract Ismael Navas-Delgado, Maria del Mar Rojano-Muñoz, Sergio Ramírez, Antonio J. Pérez, Eduardo Andrés León, Jose F. Aldana-Montes, and Oswaldo Trelles

Intelligent client for integrating bioinformatics services
Bioinformatics Advance Access published on October 27, 2005
Bioinformatics 2006 22: 106-111; doi:10.1093/bioinformatics/bti740 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

SEQUENCE ANALYSIS:

Get checked abstract Åsa Pérez-Bercoff, Johan Koch, and Thomas R. Bürglin

LogoBar: bar graph visualization of protein logos with gaps
Bioinformatics Advance Access published on November 3, 2005
Bioinformatics 2006 22: 112-114; doi:10.1093/bioinformatics/bti761 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

PHYLOGENETICS:

GENE EXPRESSION:

Get checked abstract Alan R. Dabney

ClaNC: point-and-click software for classifying microarrays to nearest centroids
Bioinformatics Advance Access published on November 2, 2005
Bioinformatics 2006 22: 122-123; doi:10.1093/bioinformatics/bti756 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract Xinglai Ji and Ying Xu

libSRES: a C library for stochastic ranking evolution strategy for parameter estimation
Bioinformatics Advance Access published on November 2, 2005
Bioinformatics 2006 22: 124-126; doi:10.1093/bioinformatics/bti753 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.