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Previous Next 		Contents: Volume 22, Number 13, 1 July 2006   [Index by Author] 
Down EDITORIALS
Down DISCOVERY NOTE
     SEQUENCE ANALYSIS
Down ORIGINAL PAPERS
     GENOME ANALYSIS
     SEQUENCE ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
Down APPLICATIONS NOTE
     SEQUENCE ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     DATA AND TEXT MINING
Down CORRIGENDUM
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

EDITORIALS Back

Jonathan D. Wren
Theory and reality for software patents: good in concept, not so good in practice
Bioinformatics 2006 22: 1543-1545; doi:10.1093/bioinformatics/btl168 [Extract] [Full Text] [Print PDF] [Request Permissions]  

DISCOVERY NOTE Back

SEQUENCE ANALYSIS Back

Elhanan Magidovich, Sarel J. Fleishman, and Ofer Yifrach
Intrinsically disordered C-terminal segments of voltage-activated potassium channels: a possible fishing rod-like mechanism for channel binding to scaffold proteins
Bioinformatics Advance Access published on April 6, 2006
Bioinformatics 2006 22: 1546-1550; doi:10.1093/bioinformatics/btl137 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS Back

GENOME ANALYSIS Back

Christina Toft and Mario A. Fares
GRAST: a new way of genome reduction analysis using comparative genomics
Bioinformatics Advance Access published on April 6, 2006
Bioinformatics 2006 22: 1551-1561; doi:10.1093/bioinformatics/btl139 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS Back

Burkhard Heil, Jost Ludwig, Hella Lichtenberg-Fraté, and Thomas Lengauer
Computational recognition of potassium channel sequences
Bioinformatics Advance Access published on April 4, 2006
Bioinformatics 2006 22: 1562-1568; doi:10.1093/bioinformatics/btl132 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Kavitha Bhasi, Li Zhang, Daniel Brazeau, Aidong Zhang, and Murali Ramanathan
VizStruct for visualization of genome-wide SNP analyses
Bioinformatics Advance Access published on April 13, 2006
Bioinformatics 2006 22: 1569-1576; doi:10.1093/bioinformatics/btl144 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Zhi Wei and Shane T. Jensen
GAME: detecting cis-regulatory elements using a genetic algorithm
Bioinformatics Advance Access published on April 21, 2006
Bioinformatics 2006 22: 1577-1584; doi:10.1093/bioinformatics/btl147 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS Back

Orhan Çamoglu, Tolga Can, and Ambuj K. Singh
Integrating multi-attribute similarity networks for robust representation of the protein space
Bioinformatics Advance Access published on April 4, 2006
Bioinformatics 2006 22: 1585-1592; doi:10.1093/bioinformatics/btl130 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Deniz Dalli, Andreas Wilm, Indra Mainz, and Gerhard Steger
STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
Bioinformatics Advance Access published on April 13, 2006
Bioinformatics 2006 22: 1593-1599; doi:10.1093/bioinformatics/btl142 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION Back

Adrian Alexa, Jörg Rahnenführer, and Thomas Lengauer
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
Bioinformatics Advance Access published on April 10, 2006
Bioinformatics 2006 22: 1600-1607; doi:10.1093/bioinformatics/btl140 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

G.J. McLachlan, R.W. Bean, and L. Ben-Tovim Jones
A simple implementation of a normal mixture approach to differential gene expression in multiclass microarrays
Bioinformatics Advance Access published on April 21, 2006
Bioinformatics 2006 22: 1608-1615; doi:10.1093/bioinformatics/btl148 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Golan Yona, William Dirks, Shafquat Rahman, and David M. Lin
Effective similarity measures for expression profiles
Bioinformatics Advance Access published on April 4, 2006
Bioinformatics 2006 22: 1616-1622; doi:10.1093/bioinformatics/btl127 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY Back

Hon Nian Chua, Wing-Kin Sung, and Limsoon Wong
Exploiting indirect neighbours and topological weight to predict protein function from protein–protein interactions
Bioinformatics Advance Access published on April 21, 2006
Bioinformatics 2006 22: 1623-1630; doi:10.1093/bioinformatics/btl145 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Dong-Yeon Cho, Kwang-Hyun Cho, and Byoung-Tak Zhang
Identification of biochemical networks by S-tree based genetic programming
Bioinformatics Advance Access published on April 3, 2006
Bioinformatics 2006 22: 1631-1640; doi:10.1093/bioinformatics/btl122 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Lei Nie, Gang Wu, Fred J. Brockman, and Weiwen Zhang
Integrated analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: zero-inflated Poisson regression models to predict abundance of undetected proteins
Bioinformatics Advance Access published on May 4, 2006
Bioinformatics 2006 22: 1641-1647; doi:10.1093/bioinformatics/btl134 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING Back

Shanfeng Zhu, Keiko Udaka, John Sidney, Alessandro Sette, Kiyoko F. Aoki-Kinoshita, and Hiroshi Mamitsuka
Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules
Bioinformatics Advance Access published on April 13, 2006
Bioinformatics 2006 22: 1648-1655; doi:10.1093/bioinformatics/btl141 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE Back

SEQUENCE ANALYSIS Back

I. Mihalek, I. Res, and O. Lichtarge
Evolutionary trace report_maker: a new type of service for comparative analysis of proteins
Bioinformatics Advance Access published on April 27, 2006
Bioinformatics 2006 22: 1656-1657; doi:10.1093/bioinformatics/btl157 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Weizhong Li and Adam Godzik
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Bioinformatics Advance Access published on May 26, 2006
Bioinformatics 2006 22: 1658-1659; doi:10.1093/bioinformatics/btl158 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

STRUCTURAL BIOINFORMATICS Back

Olga Kirillova and Wladek Minor
Map2mod—a server for evaluation of crystallographic models and their agreement with electron density maps
Bioinformatics Advance Access published on April 27, 2006
Bioinformatics 2006 22: 1660-1661; doi:10.1093/bioinformatics/btl152 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION Back

Hiro Takahashi and Hiroyuki Honda
Modified signal-to-noise: a new simple and practical gene filtering approach based on the concept of projective adaptive resonance theory (PART) filtering method
Bioinformatics Advance Access published on April 21, 2006
Bioinformatics 2006 22: 1662-1664; doi:10.1093/bioinformatics/btl156 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

Fei Pan, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, Jianjun Hu, and Xianghong Jasmine Zhou
Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data
Bioinformatics Advance Access published on May 3, 2006
Bioinformatics 2006 22: 1665-1667; doi:10.1093/bioinformatics/btl163 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

DATA AND TEXT MINING Back

X. Yuan, Z. Z. Hu, H. T. Wu, M. Torii, M. Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, and C. H. Wu
An online literature mining tool for protein phosphorylation
Bioinformatics Advance Access published on April 27, 2006
Bioinformatics 2006 22: 1668-1669; doi:10.1093/bioinformatics/btl159 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Justin Klekota, Frederick P. Roth, and Stuart L. Schreiber
Query Chem: a Google-powered web search combining text and chemical structures
Bioinformatics Advance Access published on May 3, 2006
Bioinformatics 2006 22: 1670-1673; doi:10.1093/bioinformatics/btl155 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

CORRIGENDUM Back

A. Clare, A. Karwath, H. Ougham, and R. D. King
Functional bioinformatics for Arabidopsis thaliana
Bioinformatics 2006 22: 1674; doi:10.1093/bioinformatics/btl169 [Extract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.