Bioinformatics

DISCOVERY NOTE:

GENETICS AND POPULATION ANALYSIS:

Get checked abstract María M. Abad-Grau, Rosana Montes, and Paola Sebastiani

Building chromosome-wide LD maps
Bioinformatics Advance Access published on June 16, 2006
Bioinformatics 2006 22: 1933-1934; doi:10.1093/bioinformatics/btl288 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS:

GENOME ANALYSIS:

Get checked abstract Pierre Brézellec, Mark Hoebeke, Marie-Sophie Hiet, Sophie Pasek, and Jean-Luc Ferat

DomainSieve: a protein domain-based screen that led to the identification of dam-associated genes with potential link to DNA maintenance
Bioinformatics Advance Access published on June 20, 2006
Bioinformatics 2006 22: 1935-1941; doi:10.1093/bioinformatics/btl336 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Dan L. Nicolae, Xiaolin Wu, Kazuaki Miyake, and Nancy J. Cox

GEL: a novel genotype calling algorithm using empirical likelihood
Bioinformatics Advance Access published on June 29, 2006
Bioinformatics 2006 22: 1942-1947; doi:10.1093/bioinformatics/btl341 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS:

STRUCTURAL BIOINFORMATICS:

ORIGINAL PAPER:

GENE EXPRESSION:

ORIGINAL PAPERS:

GENE EXPRESSION:

Get checked abstract Jun Liu, Jaaved Mohammed, James Carter, Sanjay Ranka, Tamer Kahveci, and Michael Baudis

Distance-based clustering of CGH data
Bioinformatics Advance Access published on May 16, 2006
Bioinformatics 2006 22: 1971-1978; doi:10.1093/bioinformatics/btl185 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Stan Pounds and Cheng Cheng

Robust estimation of the false discovery rate
Bioinformatics Advance Access published on June 15, 2006
Bioinformatics 2006 22: 1979-1987; doi:10.1093/bioinformatics/btl328 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Zhaohui S. Qin

Clustering microarray gene expression data using weighted Chinese restaurant process
Bioinformatics Advance Access published on June 9, 2006
Bioinformatics 2006 22: 1988-1997; doi:10.1093/bioinformatics/btl284 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract Jin Chen, Wynne Hsu, Mong Li Lee, and See-Kiong Ng

Increasing confidence of protein interactomes using network topological metrics
Bioinformatics Advance Access published on June 20, 2006
Bioinformatics 2006 22: 1998-2004; doi:10.1093/bioinformatics/btl335 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Je-Gun Joung, Dongho Shin, Rho Hyun Seong, and Byoung-Tak Zhang

Identification of regulatory modules by co-clustering latent variable models: stem cell differentiation
Bioinformatics 2006 22: 2005-2011; doi:10.1093/bioinformatics/btl343 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Julie L. Morrison, Rainer Breitling, Desmond J. Higham, and David R. Gilbert

A lock-and-key model for protein–protein interactions
Bioinformatics Advance Access published on June 20, 2006
Bioinformatics 2006 22: 2012-2019; doi:10.1093/bioinformatics/btl338 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Herbert Pang, Aiping Lin, Matthew Holford, Bradley E. Enerson, Bin Lu, Michael P. Lawton, Eugenia Floyd, and Hongyu Zhao

Pathway analysis using random forests classification and regression
Bioinformatics Advance Access published on June 29, 2006
Bioinformatics 2006 22: 2028-2036; doi:10.1093/bioinformatics/btl344 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Get checked abstract Jiexun Li, Xin Li, Hua Su, Hsinchun Chen, and David W. Galbraith

A framework of integrating gene relations from heterogeneous data sources: an experiment on Arabidopsis thaliana
Bioinformatics Advance Access published on July 4, 2006
Bioinformatics 2006 22: 2037-2043; doi:10.1093/bioinformatics/btl345 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

GENOME ANALYSIS:

PHYLOGENETICS:

Get checked abstract Marc A. Suchard and Benjamin D. Redelings

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny
Bioinformatics Advance Access published on May 5, 2006
Bioinformatics 2006 22: 2047-2048; doi:10.1093/bioinformatics/btl175 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS:

Get checked abstract Daniel H. Morgan, David M. Kristensen, David Mittelman, and Olivier Lichtarge

ET viewer: an application for predicting and visualizing functional sites in protein structures
Bioinformatics Advance Access published on June 29, 2006
Bioinformatics 2006 22: 2049-2050; doi:10.1093/bioinformatics/btl285 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract C. Spieth, J. Supper, F. Streichert, N. Speer, and A. Zell

JCell—a Java-based framework for inferring regulatory networks from time series data
Bioinformatics Advance Access published on June 16, 2006
Bioinformatics 2006 22: 2051-2052; doi:10.1093/bioinformatics/btl322 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Seong-Eui Hong, Seong-Hwan Rho, Young Il Yeom, and Do Han Kim

HCNet: a database of heart and calcium functional network
Bioinformatics Advance Access published on June 20, 2006
Bioinformatics 2006 22: 2053-2054; doi:10.1093/bioinformatics/btl331 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

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