Bioinformatics

EDITORIALS:

Udo Hahn and Alfonso Valencia

Semantic Mining in Biomedicine (Introduction to the papers selected from the SMBM 2005 Symposium, Hinxton, U.K., April 2005)
Bioinformatics 2006 22: 643-644; doi:10.1093/bioinformatics/btl084 [Extract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Get checked abstract Jasmin Saric, Lars Juhl Jensen, Rossitza Ouzounova, Isabel Rojas, and Peer Bork

Extraction of regulatory gene/protein networks from Medline
Bioinformatics Advance Access published on July 26, 2005
Bioinformatics 2006 22: 645-650; doi:10.1093/bioinformatics/bti597 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Ted Sandler, Andrew I. Schein, and Lyle H. Ungar

Automatic term list generation for entity tagging
Bioinformatics Advance Access published on October 25, 2005
Bioinformatics 2006 22: 651-657; doi:10.1093/bioinformatics/bti733 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Patrick Ruch

Automatic assignment of biomedical categories: toward a generic approach
Bioinformatics Advance Access published on November 15, 2005
Bioinformatics 2006 22: 658-664; doi:10.1093/bioinformatics/bti783 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Jin-Bok Lee, Jung-jae Kim, and Jong C. Park

Automatic extension of Gene Ontology with flexible identification of candidate terms
Bioinformatics Advance Access published on January 21, 2006
Bioinformatics 2006 22: 665-670; doi:10.1093/bioinformatics/btl010 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DISCOVERY NOTE:

SEQUENCE ANALYSIS:

Get checked abstract Elizabeta Bab-Dinitz, Hagay Shmuely, Julie Maupin-Furlow, Jerry Eichler, and Boaz Shaanan

Haloferax volcanii PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?
Bioinformatics Advance Access published on January 10, 2006
Bioinformatics 2006 22: 671-675; doi:10.1093/bioinformatics/btk043 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS:

GENOME ANALYSIS:

Get checked abstract Valentina Boeva, Mireille Regnier, Dmitri Papatsenko, and Vsevolod Makeev

Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression
Bioinformatics Advance Access published on January 10, 2006
Bioinformatics 2006 22: 676-684; doi:10.1093/bioinformatics/btk032 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Chia-Jung Chang, Yao-Ting Huang, and Kun-Mao Chao

A greedier approach for finding tag SNPs
Bioinformatics Advance Access published on January 10, 2006
Bioinformatics 2006 22: 685-691; doi:10.1093/bioinformatics/btk035 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SEQUENCE ANALYSIS:

Get checked abstract Xiang Shao, Valery Shepelev, and Alexei Fedorov

Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans
Bioinformatics Advance Access published on November 24, 2005
Bioinformatics 2006 22: 692-698; doi:10.1093/bioinformatics/bti795 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS:

Get checked abstract Joanna C. Chiu, Ernest K. Lee, Mary G. Egan, Indra Neil Sarkar, Gloria M. Coruzzi, and Rob DeSalle

OrthologID: automation of genome-scale ortholog identification within a parsimony framework
Bioinformatics Advance Access published on January 12, 2006
Bioinformatics 2006 22: 699-707; doi:10.1093/bioinformatics/btk040 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Daniele Catanzaro, Raffaele Pesenti, and Michel C. Milinkovitch

A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model
Bioinformatics Advance Access published on January 5, 2006
Bioinformatics 2006 22: 708-715; doi:10.1093/bioinformatics/btk001 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS:

GENE EXPRESSION:

Get checked abstract Kristin Missal, Michael A. Cross, and Dirk Drasdo

Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment
Bioinformatics Advance Access published on December 6, 2005
Bioinformatics 2006 22: 731-738; doi:10.1093/bioinformatics/bti820 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract Zheng Li, Stephen M. Shaw, Matthew J. Yedwabnick, and Christina Chan

Using a state-space model with hidden variables to infer transcription factor activities
Bioinformatics Advance Access published on January 10, 2006
Bioinformatics 2006 22: 747-754; doi:10.1093/bioinformatics/btk034 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Get checked abstract Zuyi Wang, Yue Wang, Jianhua Xuan, Yibin Dong, Marina Bakay, Yuanjian Feng, Robert Clarke, and Eric P. Hoffman

Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data
Bioinformatics Advance Access published on January 10, 2006
Bioinformatics 2006 22: 755-761; doi:10.1093/bioinformatics/btk036 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

SEQUENCE ANALYSIS:

GENE EXPRESSION:

Get checked abstract Jonathon Blake, Christian Schwager, Misha Kapushesky, and Alvis Brazma

ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression
Bioinformatics Advance Access published on December 23, 2005
Bioinformatics 2006 22: 765-767; doi:10.1093/bioinformatics/btk022 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Get checked abstract Alun Thomas and Nicola J. Camp

Maximum likelihood estimates of allele frequencies and error rates from samples of related individuals by gene counting
Bioinformatics Advance Access published on January 12, 2006
Bioinformatics 2006 22: 771-772; doi:10.1093/bioinformatics/btk049 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Get checked abstract E. A. Adie, R. R. Adams, K. L. Evans, D. J. Porteous, and B. S. Pickard

SUSPECTS: enabling fast and effective prioritization of positional candidates
Bioinformatics Advance Access published on January 19, 2006
Bioinformatics 2006 22: 773-774; doi:10.1093/bioinformatics/btk031 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.