Skip Navigation

Receive this page by email each issue: [Sign up for eTOCs]

Cover Image
Other Issues:
Previous Next 		Contents: Volume 22, Number 9, 1 May 2006   [Index by Author] 
       DISCOVERY NOTE
                SEQUENCE ANALYSIS
       ORIGINAL PAPERS
                GENOME ANALYSIS
                SEQUENCE ANALYSIS
                PHYLOGENETICS
                STRUCTURAL BIOINFORMATICS
                GENE EXPRESSION
                DATA AND TEXT MINING
                DATABASES AND ONTOLOGIES
       APPLICATIONS NOTE
                GENOME ANALYSIS
                SEQUENCE ANALYSIS
                SYSTEMS BIOLOGY
                DATA AND TEXT MINING
Find articles in this issue containing these words:
[Search ALL Issues]

Table of Contents (Print PDF)

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

DISCOVERY NOTE:

SEQUENCE ANALYSIS:

Chris P. Ponting
A novel domain suggests a ciliary function for ASPM, a brain size determining gene
Bioinformatics Advance Access published on January 27, 2006
Bioinformatics 2006 22: 1031-1035; doi:10.1093/bioinformatics/btl022 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

ORIGINAL PAPERS:

GENOME ANALYSIS:

Fan Hsu, W. James Kent, Hiram Clawson, Robert M. Kuhn, Mark Diekhans, and David Haussler
The UCSC Known Genes
Bioinformatics Advance Access published on February 24, 2006
Bioinformatics 2006 22: 1036-1046; doi:10.1093/bioinformatics/btl048 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

SEQUENCE ANALYSIS:

Lawrence S Hon and Ajay N Jain
A deterministic motif finding algorithm with application to the human genome
Bioinformatics Advance Access published on February 2, 2006
Bioinformatics 2006 22: 1047-1054; doi:10.1093/bioinformatics/btl037 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Igor B. Kuznetsov and Seungwoo Hwang
A novel sensitive method for the detection of user-defined compositional bias in biological sequences
Bioinformatics Advance Access published on February 24, 2006
Bioinformatics 2006 22: 1055-1063; doi:10.1093/bioinformatics/btl049 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS:

Jochen Maydt and Thomas Lengauer
Recco: recombination analysis using cost optimization
Bioinformatics Advance Access published on February 17, 2006
Bioinformatics 2006 22: 1064-1071; doi:10.1093/bioinformatics/btl057 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

F. Collyn, L. Guy, M. Marceau, M. Simonet, and C.-A. H. Roten
Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics
Bioinformatics Advance Access published on November 22, 2005
Bioinformatics 2006 22: 1072-1079; doi:10.1093/bioinformatics/bti793 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS:

Jessica Ebert and Douglas Brutlag
Development and validation of a consistency based multiple structure alignment algorithm
Bioinformatics Advance Access published on February 10, 2006
Bioinformatics 2006 22: 1080-1087; doi:10.1093/bioinformatics/btl046 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Violaine Moreau, Claude Granier, Sylvie Villard, Daniel Laune, and Franck Molina
Discontinuous epitope prediction based on mimotope analysis
Bioinformatics Advance Access published on January 24, 2006
Bioinformatics 2006 22: 1088-1095; doi:10.1093/bioinformatics/btl012 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

GENE EXPRESSION:

Ana Conesa, María José Nueda, Alberto Ferrer, and Manuel Talón
maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments
Bioinformatics Advance Access published on February 15, 2006
Bioinformatics 2006 22: 1096-1102; doi:10.1093/bioinformatics/btl056 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

C. Prieto, M.J. Rivas, J.M. Sánchez, J. López-Fidalgo, and J. De Las Rivas
Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genes
Bioinformatics Advance Access published on February 24, 2006
Bioinformatics 2006 22: 1103-1110; doi:10.1093/bioinformatics/btl053 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Lee Weng, Hongyue Dai, Yihui Zhan, Yudong He, Sergey B. Stepaniants, and Douglas E. Bassett
Rosetta error model for gene expression analysis
Bioinformatics Advance Access published on March 7, 2006
Bioinformatics 2006 22: 1111-1121; doi:10.1093/bioinformatics/btl045 [Abstract] [FREE Full Text] [Print PDF] [Supplementary material]   OPEN ACCESS ARTICLE  

Amela Prelic, Stefan Bleuler, Philip Zimmermann, Anja Wille, Peter Bühlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele, and Eckart Zitzler
A systematic comparison and evaluation of biclustering methods for gene expression data
Bioinformatics Advance Access published on February 24, 2006
Bioinformatics 2006 22: 1122-1129; doi:10.1093/bioinformatics/btl060 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATA AND TEXT MINING:

A. Clare, A. Karwath, H. Ougham, and R. D. King
Functional bioinformatics for Arabidopsis thaliana
Bioinformatics Advance Access published on February 15, 2006
Bioinformatics 2006 22: 1130-1136; doi:10.1093/bioinformatics/btl051 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

U. Radetzki, U. Leser, S. C. Schulze-Rauschenbach, J. Zimmermann, J. Lüssem, T. Bode, and A. B. Cremers
Adapters, shims, and glue—service interoperability for in silico experiments
Bioinformatics Advance Access published on February 15, 2006
Bioinformatics 2006 22: 1137-1143; doi:10.1093/bioinformatics/btl054 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

GENOME ANALYSIS:

J. C. Marioni, N. P. Thorne, and S. Tavaré
BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data
Bioinformatics Advance Access published on March 13, 2006
Bioinformatics 2006 22: 1144-1146; doi:10.1093/bioinformatics/btl089 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

SEQUENCE ANALYSIS:

David C. Walley, Ben W. Tripp, Young C. Song, Keith R. Walley, and Scott J. Tebbutt
MACGT: multi-dimensional automated clustering genotyping tool for analysis of microarray-based mini-sequencing data
Bioinformatics Advance Access published on March 7, 2006
Bioinformatics 2006 22: 1147-1149; doi:10.1093/bioinformatics/btl080 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Supplementary Data]   OPEN ACCESS ARTICLE  

SYSTEMS BIOLOGY:

Dong-Yup Lee, Choamun Yun, Ayoun Cho, Bo Kyeng Hou, Sunwon Park, and Sang Yup Lee
WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks
Bioinformatics Advance Access published on March 16, 2006
Bioinformatics 2006 22: 1150-1151; doi:10.1093/bioinformatics/btl091 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Sebastian Wernicke and Florian Rasche
FANMOD: a tool for fast network motif detection
Bioinformatics Advance Access published on February 2, 2006
Bioinformatics 2006 22: 1152-1153; doi:10.1093/bioinformatics/btl038 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Victor Trevino and Francesco Falciani
GALGO: an R package for multivariate variable selection using genetic algorithms
Bioinformatics Advance Access published on March 1, 2006
Bioinformatics 2006 22: 1154-1156; doi:10.1093/bioinformatics/btl074 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.