Bioinformatics

DISCOVERY NOTE:

GENETICS AND POPULATION ANALYSIS:

Get checked abstract Jan Freudenberg, Ying-Hui Fu, and Louis J. Ptácek

Human recombination rates are increased around accelerated conserved regions—evidence for continued selection?
Bioinformatics Advance Access published on April 26, 2007
Bioinformatics 2007 23: 1441-1443; doi:10.1093/bioinformatics/btm137 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

ORIGINAL PAPERS:

GENOME ANALYSIS:

Get checked abstract Yuhyun Park, Sean R. Downing, Dohyun Kim, William C. Hahn, Cheng Li, Philip W. Kantoff, and L.J. Wei

Simultaneous and exact interval estimates for the contrast of two groups based on an extremely high dimensional variable: application to mass spec data
Bioinformatics Advance Access published on April 25, 2007
Bioinformatics 2007 23: 1451-1458; doi:10.1093/bioinformatics/btm130 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANLYSIS:

Get checked abstract Edward Wijaya, Kanagasabai Rajaraman, Siu-Ming Yiu, and Wing-Kin Sung

Detection of generic spaced motifs using submotif pattern mining
Bioinformatics Advance Access published on May 5, 2007
Bioinformatics 2007 23: 1476-1485; doi:10.1093/bioinformatics/btm118 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

GENE EXPRESSION:

Get checked abstract Lifeng Wang, Guang Chen, and Hongzhe Li

Group SCAD regression analysis for microarray time course gene expression data
Bioinformatics Advance Access published on April 26, 2007
Bioinformatics 2007 23: 1486-1494; doi:10.1093/bioinformatics/btm125 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Hyunsoo Kim and Haesun Park

Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis
Bioinformatics Advance Access published on May 5, 2007
Bioinformatics 2007 23: 1495-1502; doi:10.1093/bioinformatics/btm134 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract D. Huang and Tommy W. S. Chow

Identifying the biologically relevant gene categories based on gene expression and biological data: an example on prostate cancer
Bioinformatics Advance Access published on April 26, 2007
Bioinformatics 2007 23: 1503-1510; doi:10.1093/bioinformatics/btm141 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Wai-Ki Ching, Shuqin Zhang, Michael K. Ng, and Tatsuya Akutsu

An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks
Bioinformatics Advance Access published on April 26, 2007
Bioinformatics 2007 23: 1511-1518; doi:10.1093/bioinformatics/btm142 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Get checked abstract Alexandra Goll and Peter Bauer

Two-stage designs applying methods differing in costs
Bioinformatics Advance Access published on April 26, 2007
Bioinformatics 2007 23: 1519-1526; doi:10.1093/bioinformatics/btm140 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Get checked abstract Jian Yang, Jun Zhu, and Robert W. Williams

Mapping the genetic architecture of complex traits in experimental populations
Bioinformatics Advance Access published on April 25, 2007
Bioinformatics 2007 23: 1527-1536; doi:10.1093/bioinformatics/btm143 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

SYSTEMS BIOLOGY:

Get checked abstract Zhi Wei and Hongzhe Li

A Markov random field model for network-based analysis of genomic data
Bioinformatics Advance Access published on May 5, 2007
Bioinformatics 2007 23: 1537-1544; doi:10.1093/bioinformatics/btm129 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

APPLICATIONS NOTES:

GENOME ANALYSIS:

SEQUENCE ANALYSIS:

Get checked abstract Matthew G. Goode and Allen G. Rodrigo

SQUINT: a multiple alignment program and editor
Bioinformatics Advance Access published on May 7, 2007
Bioinformatics 2007 23: 1553-1555; doi:10.1093/bioinformatics/btm128 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS:

Get checked abstract Pere Puigbò, Santiago Garcia-Vallvé, and James O. McInerney

TOPD/FMTS: a new software to compare phylogenetic trees
Bioinformatics Advance Access published on April 25, 2007
Bioinformatics 2007 23: 1556-1558; doi:10.1093/bioinformatics/btm135 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION:

Get checked abstract Andrzej Kudlicki, Maga Rowicka, and Zbyszek Otwinowski

SCEPTRANS: an online tool for analyzing periodic transcription in yeast
Bioinformatics Advance Access published on March 30, 2007
Bioinformatics 2007 23: 1559-1561; doi:10.1093/bioinformatics/btm126 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

Get checked abstract Steven A. Eschrich and Andrew M. Hoerter

Libaffy: software for processing Affymetrix(R) GeneChip(R) data
Bioinformatics Advance Access published on April 26, 2007
Bioinformatics 2007 23: 1562-1564; doi:10.1093/bioinformatics/btm127 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Get checked abstract Liming Liang, Sebastian Zöllner, and Gonçalo R. Abecasis

GENOME: a rapid coalescent-based whole genome simulator
Bioinformatics Advance Access published on April 25, 2007
Bioinformatics 2007 23: 1565-1567; doi:10.1093/bioinformatics/btm138 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

ERRATUM:

Jie Zhou and Hanchuan Peng

Automatic recognition and annotation of gene expression patterns of fly embryos
Bioinformatics 2007 23: 1571-1572; doi:10.1093/bioinformatics/btm244 [Extract] [Full Text] [Print PDF] [Request Permissions]  

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