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Previous Next 		Contents: Volume 23, Number 18, 15 September 2007   [Index by Author] 
       ORIGINAL PAPERS
                SEQUENCE ANALYSIS
                PHYLOGENETICS
                STRUCTURAL BIOINFORMATICS
                GENE EXPRESSION
                GENETICS AND POPULATION ANALYSIS
                SYSTEMS BIOLOGY
                DATA AND TEXT MINING
       APPLICATIONS NOTES
                SEQUENCE ANALYSIS
                STRUCTURAL BIOINFORMATICS
                GENE EXPRESSION
                SYSTEMS BIOLOGY
                DATA AND TEXT MINING
                DATABASES AND ONTOLOGIES
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ORIGINAL PAPERS:

SEQUENCE ANALYSIS:

Adam James Reid, Corin Yeats, and Christine Anne Orengo
Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone
Bioinformatics Advance Access published on August 20, 2007
Bioinformatics 2007 23: 2353-2360; doi:10.1093/bioinformatics/btm355 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

Andreas Heger, Swapan Mallick, Christopher Wilton, and Liisa Holm
The global trace graph, a novel paradigm for searching protein sequence databases
Bioinformatics Advance Access published on September 6, 2007
Bioinformatics 2007 23: 2361-2367; doi:10.1093/bioinformatics/btm358 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

PHYLOGENETICS:

Xiu-Feng Wan, Guorong Chen, Feng Luo, Michael Emch, and Ruben Donis
A quantitative genotype algorithm reflecting H5N1 Avian influenza niches
Bioinformatics Advance Access published on July 10, 2007
Bioinformatics 2007 23: 2368-2375; doi:10.1093/bioinformatics/btm354 [Abstract] [FREE Full Text] [Print PDF] [Supplementary data]   OPEN ACCESS ARTICLE  

STRUCTURAL BIOINFORMATICS:

Avner Schlessinger, Marco Punta, and Burkhard Rost
Natively unstructured regions in proteins identified from contact predictions
Bioinformatics Advance Access published on August 20, 2007
Bioinformatics 2007 23: 2376-2384; doi:10.1093/bioinformatics/btm349 [Abstract] [FREE Full Text] [Print PDF] [Supplementary data]   OPEN ACCESS ARTICLE  

GENE EXPRESSION:

Hongfang Liu, Barry R. Zeeberg, Gang Qu, A. Gunes Koru, Alessandro Ferrucci, Ari Kahn, Michael C. Ryan, Antej Nuhanovic, Peter J. Munson, William C. Reinhold, David W. Kane, and John N. Weinstein
AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets
Bioinformatics Advance Access published on July 27, 2007
Bioinformatics 2007 23: 2385-2390; doi:10.1093/bioinformatics/btm360 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

Jianqing Fan and Yue Niu
Selection and validation of normalization methods for c-DNA microarrays using within-array replications
Bioinformatics Advance Access published on July 27, 2007
Bioinformatics 2007 23: 2391-2398; doi:10.1093/bioinformatics/btm361 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Yun Joo Yoo, Jianming Tang, Richard A. Kaslow, and Kui Zhang
Haplotype inference for present–absent genotype data using previously identified haplotypes and haplotype patterns
Bioinformatics Advance Access published on July 21, 2007
Bioinformatics 2007 23: 2399-2406; doi:10.1093/bioinformatics/btm371 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

SYSTEMS BIOLOGY:

Mohamed Elati, Pierre Neuvial, Monique Bolotin-Fukuhara, Emmanuel Barillot, François Radvanyi, and Céline Rouveirol
LICORN: learning cooperative regulation networks from gene expression data
Bioinformatics Advance Access published on August 24, 2007
Bioinformatics 2007 23: 2407-2414; doi:10.1093/bioinformatics/btm352 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Grégory Batt, Boyan Yordanov, Ron Weiss, and Calin Belta
Robustness analysis and tuning of synthetic gene networks
Bioinformatics Advance Access published on July 27, 2007
Bioinformatics 2007 23: 2415-2422; doi:10.1093/bioinformatics/btm362 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Zuoshuang Xiang, Rebecca M. Minter, Xiaoming Bi, Peter J. Woolf, and Yongqun He
miniTUBA: medical inference by network integration of temporal data using Bayesian analysis
Bioinformatics Advance Access published on July 21, 2007
Bioinformatics 2007 23: 2423-2432; doi:10.1093/bioinformatics/btm372 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Jeongah Yoon, Yaguang Si, Ryan Nolan, and Kyongbum Lee
Modular decomposition of metabolic reaction networks based on flux analysis and pathway projection
Bioinformatics Advance Access published on July 27, 2007
Bioinformatics 2007 23: 2433-2440; doi:10.1093/bioinformatics/btm374 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Jaroslaw Harezlak, Mike Wang, David Christiani, and Xihong Lin
Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments
Bioinformatics Advance Access published on July 11, 2007
Bioinformatics 2007 23: 2441-2448; doi:10.1093/bioinformatics/btm346 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Ziliang Qian, Lingyi Lu, XiaoJun Liu, Yu-Dong Cai, and Yixue Li
An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization
Bioinformatics Advance Access published on July 10, 2007
Bioinformatics 2007 23: 2449-2454; doi:10.1093/bioinformatics/btm348 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

Hiroto Saigo, Takeaki Uno, and Koji Tsuda
Mining complex genotypic features for predicting HIV-1 drug resistance
Bioinformatics Advance Access published on August 13, 2007
Bioinformatics 2007 23: 2455-2462; doi:10.1093/bioinformatics/btm353 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Jian Huang, Arief Gusnanto, Kathleen O'Sullivan, Johan Staaf, Åke Borg, and Yudi Pawitan
Robust smooth segmentation approach for array CGH data analysis
Bioinformatics Advance Access published on July 27, 2007
Bioinformatics 2007 23: 2463-2469; doi:10.1093/bioinformatics/btm359 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

Youjuan Li and Ji Zhu
Analysis of array CGH data for cancer studies using fused quantile regression
Bioinformatics Advance Access published on July 20, 2007
Bioinformatics 2007 23: 2470-2476; doi:10.1093/bioinformatics/btm364 [Abstract] [Full Text] [Print PDF] [Supplementary data] [Request Permissions]  

Weijian Xuan, Pinglang Wang, Stanley J. Watson, and Fan Meng
Medline search engine for finding genetic markers with biological significance
Bioinformatics Advance Access published on September 6, 2007
Bioinformatics 2007 23: 2477-2484; doi:10.1093/bioinformatics/btm375 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

APPLICATIONS NOTES:

SEQUENCE ANALYSIS:

Gerton Lunter
HMMoC—a compiler for hidden Markov models
Bioinformatics Advance Access published on July 10, 2007
Bioinformatics 2007 23: 2485-2487; doi:10.1093/bioinformatics/btm350 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Andrija Tomovic and Edward J. Oakeley
Quality estimation of multiple sequence alignments by Bayesian hypothesis testing
Bioinformatics Advance Access published on July 27, 2007
Bioinformatics 2007 23: 2488-2490; doi:10.1093/bioinformatics/btm366 [Abstract] [FREE Full Text] [Print PDF] [Supplementary data]   OPEN ACCESS ARTICLE  

STRUCTURAL BIOINFORMATICS:

Jo-Lan Chung, John E. Beaver, Eric D. Scheeff, and Philip E. Bourne
Con-Struct Map: a comparative contact map analysis tool
Bioinformatics Advance Access published on August 20, 2007
Bioinformatics 2007 23: 2491-2492; doi:10.1093/bioinformatics/btm356 [Abstract] [FREE Full Text] [Print PDF] [Supplementary data]   OPEN ACCESS ARTICLE  

GENE EXPRESSION:

Chris Harbron, Kai-Ming Chang, and Marie C. South
RefPlus: an R package extending the RMA Algorithm
Bioinformatics Advance Access published on July 10, 2007
Bioinformatics 2007 23: 2493-2494; doi:10.1093/bioinformatics/btm357 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Juan Hernandez-Toro, Carlos Prieto, and Javier De Las Rivas
APID2NET: unified interactome graphic analyzer
Bioinformatics Advance Access published on July 21, 2007
Bioinformatics 2007 23: 2495-2497; doi:10.1093/bioinformatics/btm373 [Abstract] [FREE Full Text] [Print PDF] [Supplementary data]   OPEN ACCESS ARTICLE  

DATA AND TEXT MINING:

Supawadee Ingsriswang and Eakasit Pacharawongsakda
sMOL Explorer: an open source, web-enabled database and exploration tool for Small MOLecules datasets
Bioinformatics Advance Access published on July 27, 2007
Bioinformatics 2007 23: 2498-2500; doi:10.1093/bioinformatics/btm363 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

DATABASES AND ONTOLOGIES:

Hongseok Yun, Jeong Wook Lee, Joonwoo Jeong, Jaesung Chung, Jong Myoung Park, Han Na Myoung, and Sang Yup Lee
EcoProDB: the Escherichia coli protein database
Bioinformatics Advance Access published on July 10, 2007
Bioinformatics 2007 23: 2501-2503; doi:10.1093/bioinformatics/btm351 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

C. Voegele, S.V. Tavtigian, D. de Silva, S. Cuber, A. Thomas, and F. Le Calvez-Kelm
A Laboratory Information Management System (LIMS) for a high throughput genetic platform aimed at candidate gene mutation screening
Bioinformatics Advance Access published on August 20, 2007
Bioinformatics 2007 23: 2504-2506; doi:10.1093/bioinformatics/btm365 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.