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Previous Next 		Contents: Volume 24, Number 10, 15 May 2008   [Index by Author] 
Down DISCOVERY NOTE
     DATA AND TEXT MINING
Down ORIGINAL PAPERS
     GENOME ANALYSIS
     SEQUENCE ANALYSIS
     PHYLOGENETICS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
     DATABASES AND ONTOLOGIES
Down APPLICATIONS NOTES
     GENOME ANALYSIS
     SEQUENCE ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATABASES AND ONTOLOGIES
Down CORRIGENDUM
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

DISCOVERY NOTE Back

DATA AND TEXT MINING Back

Roger Higdon, Gerald van Belle, and Eugene Kolker
A note on the false discovery rate and inconsistent comparisons between experiments
Bioinformatics Advance Access published on April 19, 2008
Bioinformatics 2008 24: 1225-1228; doi:10.1093/bioinformatics/btn120 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS Back

GENOME ANALYSIS Back

Niranjan Nagarajan, Timothy D. Read, and Mihai Pop
Scaffolding and validation of bacterial genome assemblies using optical restriction maps
Bioinformatics Advance Access published on March 20, 2008
Bioinformatics 2008 24: 1229-1235; doi:10.1093/bioinformatics/btn102 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

SEQUENCE ANALYSIS Back

Rahul Satija, Lior Pachter, and Jotun Hein
Combining statistical alignment and phylogenetic footprinting to detect regulatory elements
Bioinformatics Advance Access published on March 18, 2008
Bioinformatics 2008 24: 1236-1242; doi:10.1093/bioinformatics/btn104 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Ying Liu, Eran Eyal, and Ivet Bahar
Analysis of correlated mutations in HIV-1 protease using spectral clustering
Bioinformatics Advance Access published on March 28, 2008
Bioinformatics 2008 24: 1243-1250; doi:10.1093/bioinformatics/btn110 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

Pawel Szczesny and Andrei Lupas
Domain annotation of trimeric autotransporter adhesins—daTAA
Bioinformatics Advance Access published on April 8, 2008
Bioinformatics 2008 24: 1251-1256; doi:10.1093/bioinformatics/btn118 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

PHYLOGENETICS Back

Orland Gonzalez and Ralf Zimmer
Assigning functional linkages to proteins using phylogenetic profiles and continuous phenotypes
Bioinformatics Advance Access published on April 1, 2008
Bioinformatics 2008 24: 1257-1263; doi:10.1093/bioinformatics/btn106 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

STRUCTURAL BIOINFORMATICS Back

Theodoros Damoulas and Mark A. Girolami
Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection
Bioinformatics Advance Access published on March 31, 2008
Bioinformatics 2008 24: 1264-1270; doi:10.1093/bioinformatics/btn112 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Yungki Park and Volkhard Helms
Prediction of the translocon-mediated membrane insertion free energies of protein sequences
Bioinformatics Advance Access published on April 3, 2008
Bioinformatics 2008 24: 1271-1277; doi:10.1093/bioinformatics/btn114 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

GENE EXPRESSION Back

Naoaki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu, and Tetsuya Yomo
An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays
Bioinformatics Advance Access published on March 31, 2008
Bioinformatics 2008 24: 1278-1285; doi:10.1093/bioinformatics/btn109 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

SYSTEMS BIOLOGY Back

Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, and Kwang-Hyun Cho
Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data
Bioinformatics Advance Access published on March 26, 2008
Bioinformatics 2008 24: 1286-1292; doi:10.1093/bioinformatics/btn107 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATA AND TEXT MINING Back

Zengyou He, Can Yang, and Weichuan Yu
Peak bagging for peptide mass fingerprinting
Bioinformatics Advance Access published on April 7, 2008
Bioinformatics 2008 24: 1293-1299; doi:10.1093/bioinformatics/btn123 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

T. Castrignanò, M. D’Antonio, A. Anselmo, D. Carrabino, A. D’Onorio De Meo, A. M. D’Erchia, F. Licciulli, M. Mangiulli, F. Mignone, G. Pavesi, E. Picardi, A. Riva, R. Rizzi, P. Bonizzoni, and G. Pesole
ASPicDB: A database resource for alternative splicing analysis
Bioinformatics Advance Access published on April 3, 2008
Bioinformatics 2008 24: 1300-1304; doi:10.1093/bioinformatics/btn113 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

APPLICATIONS NOTES Back

GENOME ANALYSIS Back

Istvan Albert, Shinichiro Wachi, Cizhong Jiang, and B. Franklin Pugh
GeneTrack—a genomic data processing and visualization framework
Bioinformatics Advance Access published on April 3, 2008
Bioinformatics 2008 24: 1305-1306; doi:10.1093/bioinformatics/btn119 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS Back

Richard J. Edwards, Norman E. Davey, and Denis C. Shields
CompariMotif: quick and easy comparisons of sequence motifs
Bioinformatics Advance Access published on March 28, 2008
Bioinformatics 2008 24: 1307-1309; doi:10.1093/bioinformatics/btn105 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS Back

Janosch Hennig, Klaus D. M. Hennig, and Maria Sunnerhagen
MTMDAT: Automated analysis and visualization of mass spectrometry data for tertiary and quaternary structure probing of proteins
Bioinformatics Advance Access published on April 3, 2008
Bioinformatics 2008 24: 1310-1312; doi:10.1093/bioinformatics/btn116 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

Marco Vassura, Luciano Margara, Pietro Di Lena, Filippo Medri, Piero Fariselli, and Rita Casadio
FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps
Bioinformatics Advance Access published on April 1, 2008
Bioinformatics 2008 24: 1313-1315; doi:10.1093/bioinformatics/btn115 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

GENE EXPRESSION Back

Alistair M. Chalk and Erik L. L. Sonnhammer
siRNA specificity searching incorporating mismatch tolerance data
Bioinformatics Advance Access published on April 7, 2008
Bioinformatics 2008 24: 1316-1317; doi:10.1093/bioinformatics/btn121 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY Back

Sushmita Roy, Margaret Werner-Washburne, and Terran Lane
A system for generating transcription regulatory networks with combinatorial control of transcription
Bioinformatics Advance Access published on April 8, 2008
Bioinformatics 2008 24: 1318-1320; doi:10.1093/bioinformatics/btn126 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

DATABASES AND ONTOLOGIES Back

Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin, and Rolf Apweiler
UniProtJAPI: a remote API for accessing UniProt data
Bioinformatics Advance Access published on April 4, 2008
Bioinformatics 2008 24: 1321-1322; doi:10.1093/bioinformatics/btn122 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

CORRIGENDUM Back

Qing Xiong, Yuhui Qiu, and Weikuan Gu
PGMapper: a web-based tool linking phenotype to genes
Bioinformatics 2008 24: 1323; doi:10.1093/bioinformatics/btn124 [Extract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.