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Previous Next 		Contents: Volume 24, Number 14, 15 July 2008   [Index by Author] 
Down DISCOVERY NOTE
     GENOME ANALYSIS
Down ORIGINAL PAPERS
     SEQUENCE ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     GENETICS AND POPULATION ANALYSIS
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
Down APPLICATIONS NOTE
     SEQUENCE ANALYSIS
     PHYLOGENETICS
     GENETICS AND POPULATION ANALYSIS
     SYSTEMS BIOLOGY
     DATABASES AND ONTOLOGIES
Down LETTERS TO THE EDITOR
     SYSTEMS BIOLOGY
     GENE EXPRESSION
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

DISCOVERY NOTE Back

GENOME ANALYSIS Back

Andrew B. Conley, Jittima Piriyapongsa, and I. King Jordan
Retroviral promoters in the human genome
Bioinformatics Advance Access published on June 5, 2008
Bioinformatics 2008 24: 1563-1567; doi:10.1093/bioinformatics/btn243 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

ORIGINAL PAPERS Back

SEQUENCE ANALYSIS Back

Christian Martin, Naryttza N. Diaz, Jörg Ontrup, and Tim W. Nattkemper
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Bioinformatics Advance Access published on June 5, 2008
Bioinformatics 2008 24: 1568-1574; doi:10.1093/bioinformatics/btn257 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

STRUCTURAL BIOINFORMATICS Back

Christopher S. Miller and David Eisenberg
Using inferred residue contacts to distinguish between correct and incorrect protein models
Bioinformatics Advance Access published on May 29, 2008
Bioinformatics 2008 24: 1575-1582; doi:10.1093/bioinformatics/btn248 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

GENE EXPRESSION Back

Huaizhen Qin, Tao Feng, Scott A. Harding, Chung-Jui Tsai, and Shuanglin Zhang
An efficient method to identify differentially expressed genes in microarray experiments
Bioinformatics Advance Access published on May 3, 2008
Bioinformatics 2008 24: 1583-1589; doi:10.1093/bioinformatics/btn215 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Kosaku Shinoda, Masaru Tomita, and Yasushi Ishihama
Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments
Bioinformatics Advance Access published on May 19, 2008
Bioinformatics 2008 24: 1590-1595; doi:10.1093/bioinformatics/btn240 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS Back

Kristin L. Ayers and Kenneth Lange
Penalized estimation of haplotype frequencies
Bioinformatics Advance Access published on May 16, 2008
Bioinformatics 2008 24: 1596-1602; doi:10.1093/bioinformatics/btn236 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Sophia S. F. Lee, Lei Sun, Rafal Kustra, and Shelley B. Bull
EM-random forest and new measures of variable importance for multi-locus quantitative trait linkage analysis
Bioinformatics Advance Access published on May 21, 2008
Bioinformatics 2008 24: 1603-1610; doi:10.1093/bioinformatics/btn239 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

SYSTEMS BIOLOGY Back

Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, and Peter Dittrich
Computing chemical organizations in biological networks
Bioinformatics Advance Access published on May 14, 2008
Bioinformatics 2008 24: 1611-1618; doi:10.1093/bioinformatics/btn228 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Jiguo Cao and Hongyu Zhao
Estimating dynamic models for gene regulation networks
Bioinformatics Advance Access published on May 27, 2008
Bioinformatics 2008 24: 1619-1624; doi:10.1093/bioinformatics/btn246 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe Aude, Pierre Legrain, and Henning Hermjakob
InteroPORC: automated inference of highly conserved protein interaction networks
Bioinformatics Advance Access published on May 28, 2008
Bioinformatics 2008 24: 1625-1631; doi:10.1093/bioinformatics/btn249 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATA AND TEXT MINING Back

Ludger Evers and Claudia-Martina Messow
Sparse kernel methods for high-dimensional survival data
Bioinformatics Advance Access published on May 30, 2008
Bioinformatics 2008 24: 1632-1638; doi:10.1093/bioinformatics/btn253 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE Back

SEQUENCE ANALYSIS Back

James Thurmond, Hyejin Yoon, Carla Kuiken, Karina Yusim, Simon Perkins, James Theiler, Tanmoy Bhattacharya, Bette Korber, and Will Fischer
Web-based design and evaluation of T-cell vaccine candidates
Bioinformatics Advance Access published on May 29, 2008
Bioinformatics 2008 24: 1639-1640; doi:10.1093/bioinformatics/btn251 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

PHYLOGENETICS Back

Gregory E. Jordan and William H. Piel
PhyloWidget: web-based visualizations for the tree of life
Bioinformatics Advance Access published on May 16, 2008
Bioinformatics 2008 24: 1641-1642; doi:10.1093/bioinformatics/btn235 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS Back

Carlos Morcillo-Suarez, Josep Alegre, Ricardo Sangros, Elodie Gazave, Rafael de Cid, Roger Milne, Jorge Amigo, Anna Ferrer-Admetlla, Andrés Moreno-Estrada, Michelle Gardner, Ferran Casals, Anna Pérez-Lezaun, David Comas, Elena Bosch, Francesc Calafell, Jaume Bertranpetit, and Arcadi Navarro
SNP analysis to results (SNPator): a web-based environment oriented to statistical genomics analyses upon SNP data
Bioinformatics Advance Access published on May 30, 2008
Bioinformatics 2008 24: 1643-1644; doi:10.1093/bioinformatics/btn241 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Mamoru Kato, Yusuke Nakamura, and Tatsuhiko Tsunoda
MOCSphaser: a haplotype inference tool from a mixture of copy number variation and single nucleotide polymorphism data
Bioinformatics Advance Access published on May 20, 2008
Bioinformatics 2008 24: 1645-1646; doi:10.1093/bioinformatics/btn242 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

SYSTEMS BIOLOGY Back

Ahmet Sacan, Hakan Ferhatosmanoglu, and Huseyin Coskun
CellTrack: an open-source software for cell tracking and motility analysis
Bioinformatics Advance Access published on May 29, 2008
Bioinformatics 2008 24: 1647-1649; doi:10.1093/bioinformatics/btn247 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

Sebastian Bauer, Steffen Grossmann, Martin Vingron, and Peter N. Robinson
Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration
Bioinformatics Advance Access published on May 29, 2008
Bioinformatics 2008 24: 1650-1651; doi:10.1093/bioinformatics/btn250 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

LETTERS TO THE EDITOR Back

SYSTEMS BIOLOGY Back

Mark R. Segal
On E-values for tandem MS scoring schemes
Bioinformatics Advance Access published on June 17, 2008
Bioinformatics 2008 24: 1652-1653; doi:10.1093/bioinformatics/btn232 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION Back

Jainab Khatun and Morgan Giddings
In response to ‘On E-value for tandem MS scoring schemes’
Bioinformatics Advance Access published on June 17, 2008
Bioinformatics 2008 24: 1654; doi:10.1093/bioinformatics/btn252 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.