Skip Navigation

Receive this page by email each issue: [Sign up for eTOCs]

Cover Image
Other Issues:
Previous Next 		Contents: Volume 24, Number 22, 15 November 2008   [Index by Author] 
Down ORIGINAL PAPERS
     GENOME ANALYSIS
     PHYLOGENETICS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
Down APPLICATIONS NOTE
     GENOME ANALYSIS
     SEQUENCE ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
     DATABASES AND ONTOLOGIES
Down GERMAN CONFERENCE ON BIOINFORMATICS
     SYSTEMS BIOLOGY
     SEQUENCE ANALYSIS
Find articles in this issue containing these words:
[Search ALL Issues]

Front Matter (Print PDF) | Back Matter (Print PDF) | Table of Contents (Print PDF)

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

ORIGINAL PAPERS Back

GENOME ANALYSIS Back

Christina Beargie, Tsunglin Liu, Mark Corriveau, Ha Youn Lee, Jonatha Gott, and Ralf Bundschuh
Genome annotation in the presence of insertional RNA editing
Bioinformatics Advance Access published on September 25, 2008
Bioinformatics 2008 24: 2571-2578; doi:10.1093/bioinformatics/btn487 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

PHYLOGENETICS Back

Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, and Gregory A. Buck
Phylogenetic distances are encoded in networks of interacting pathways
Bioinformatics Advance Access published on September 26, 2008
Bioinformatics 2008 24: 2579-2585; doi:10.1093/bioinformatics/btn503 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

GENE EXPRESSION Back

Assaf P. Oron, Zhen Jiang, and Robert Gentleman
Gene set enrichment analysis using linear models and diagnostics
Bioinformatics Advance Access published on September 11, 2008
Bioinformatics 2008 24: 2586-2591; doi:10.1093/bioinformatics/btn465 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY Back

Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, and Tomoyuki Higuchi
Bayesian learning of biological pathways on genomic data assimilation
Bioinformatics Advance Access published on September 25, 2008
Bioinformatics 2008 24: 2592-2601; doi:10.1093/bioinformatics/btn483 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Katrin Sameith, Philipp Antczak, Elliot Marston, Nil Turan, Dieter Maier, Tanja Stankovic, and Francesco Falciani
Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage
Bioinformatics Advance Access published on September 17, 2008
Bioinformatics 2008 24: 2602-2607; doi:10.1093/bioinformatics/btn489 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Ta-tsen Soong, Kazimierz O. Wrzeszczynski, and Burkhard Rost
Physical protein–protein interactions predicted from microarrays
Bioinformatics Advance Access published on October 1, 2008
Bioinformatics 2008 24: 2608-2614; doi:10.1093/bioinformatics/btn498 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, and David A. Fell
Can sugars be produced from fatty acids? A test case for pathway analysis tools
Bioinformatics Advance Access published on September 19, 2008
Bioinformatics 2008 24: 2615-2621; doi:10.1093/bioinformatics/btn500 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATA AND TEXT MINING Back

Seesandra V. Rajagopala, Johannes Goll, N.D. Deve Gowda, Kumar C. Sunil, Björn Titz, Arnab Mukherjee, Sharmila S. Mary, Naresh Raviswaran, Chetan S. Poojari, Srinivas Ramachandra, Svetlana Shtivelband, Stephen M. Blazie, Julia Hofmann, and Peter Uetz
MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions
Bioinformatics Advance Access published on September 11, 2008
Bioinformatics 2008 24: 2622-2627; doi:10.1093/bioinformatics/btn481 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

APPLICATIONS NOTE Back

GENOME ANALYSIS Back

Craig E. Jones, Julian Schwerdt, Tessa Arwen Bretag, Ute Baumann, and Alfred L. Brown
GOSLING: a rule-based protein annotator using BLAST and GO
Bioinformatics Advance Access published on September 16, 2008
Bioinformatics 2008 24: 2628-2629; doi:10.1093/bioinformatics/btn486 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS Back

Martin Madera
Profile Comparer: a program for scoring and aligning profile hidden Markov models
Bioinformatics Advance Access published on October 9, 2008
Bioinformatics 2008 24: 2630-2631; doi:10.1093/bioinformatics/btn504 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

STRUCTURAL BIOINFORMATICS Back

Francesco Sirocco and Silvio C. E. Tosatto
TESE: generating specific protein structure test set ensembles
Bioinformatics Advance Access published on September 16, 2008
Bioinformatics 2008 24: 2632-2633; doi:10.1093/bioinformatics/btn488 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Shiyong Liu, Ying Gao, and Ilya A. Vakser
DOCKGROUND protein–protein docking decoy set
Bioinformatics Advance Access published on September 23, 2008
Bioinformatics 2008 24: 2634-2635; doi:10.1093/bioinformatics/btn497 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENE EXPRESSION Back

Edi Prifti, Jean-Daniel Zucker, Karine Clement, and Corneliu Henegar
FunNet: an integrative tool for exploring transcriptional interactions
Bioinformatics Advance Access published on September 17, 2008
Bioinformatics 2008 24: 2636-2638; doi:10.1093/bioinformatics/btn492 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Xin Zhou and Zhen Su
tCal: transcriptional probability calculator using thermodynamic model
Bioinformatics Advance Access published on September 16, 2008
Bioinformatics 2008 24: 2639-2640; doi:10.1093/bioinformatics/btn494 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY Back

Daehee Hwang, Ning Zhang, Hookeun Lee, Eugene Yi, Hui Zhang, Inyoul Y. Lee, Leroy Hood, and Ruedi Aebersold
MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis
Bioinformatics Advance Access published on September 19, 2008
Bioinformatics 2008 24: 2641-2642; doi:10.1093/bioinformatics/btn491 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING Back

Ricardo Martinez, Nicolas Pasquier, and Claude Pasquier
GenMiner: mining non-redundant association rules from integrated gene expression data and annotations
Bioinformatics Advance Access published on September 17, 2008
Bioinformatics 2008 24: 2643-2644; doi:10.1093/bioinformatics/btn490 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

Samone Khouangsathiene, Carlo Pearson, Summer Street, Betsy Ferguson, and Christopher Dubay
MonkeySNP: a web portal for non-human primate single nucleotide polymorphisms
Bioinformatics Advance Access published on September 16, 2008
Bioinformatics 2008 24: 2645-2646; doi:10.1093/bioinformatics/btn493 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Khalid Belhajjame, Andrew R. Jones, and Norman W. Paton
A toolkit for capturing and sharing FuGE experiments
Bioinformatics Advance Access published on September 17, 2008
Bioinformatics 2008 24: 2647-2649; doi:10.1093/bioinformatics/btn496 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GERMAN CONFERENCE ON BIOINFORMATICS Back

SYSTEMS BIOLOGY Back

Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, and Tim Beissbarth
Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data
Bioinformatics Advance Access published on January 28, 2008
Bioinformatics 2008 24: 2650-2656; doi:10.1093/bioinformatics/btm634 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

SEQUENCE ANALYSIS Back

Hakim Tafer and Ivo L. Hofacker
RNAplex: a fast tool for RNA–RNA interaction search
Bioinformatics Advance Access published on April 23, 2008
Bioinformatics 2008 24: 2657-2663; doi:10.1093/bioinformatics/btn193 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.