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Previous Next 		Contents: Volume 24, Number 8, 15 April 2008   [Index by Author] 
       ORIGINAL PAPERS
                GENOME ANALYSIS
                SEQUENCE ANALYSIS
                GENE EXPRESSION
                SYSTEMS BIOLOGY
       APPLICATIONS NOTES
                GENOME ANALYSIS
                STRUCTURAL BIOINFORMATICS
                GENETICS AND POPULATION ANALYSIS
                SYSTEMS BIOLOGY
                DATA AND TEXT MINING
                DATABASES AND ONTOLOGIES
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ORIGINAL PAPERS:

GENOME ANALYSIS:

Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason Miller, Nelson Axelrod, Samuel Levy, and Granger Sutton
Consensus generation and variant detection by Celera Assembler
Bioinformatics Advance Access published on March 4, 2008
Bioinformatics 2008 24: 1035-1040; doi:10.1093/bioinformatics/btn074 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

Jan Mrázek, Shaohua Xie, Xiangxue Guo, and Anuj Srivastava
AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes
Bioinformatics Advance Access published on February 26, 2008
Bioinformatics 2008 24: 1041-1048; doi:10.1093/bioinformatics/btn077 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS:

Yossef Kliger, Eyal Gofer, Assaf Wool, Amir Toporik, Avihay Apatoff, and Moshe Olshansky
Predicting proteolytic sites in extracellular proteins: only halfway there
Bioinformatics Advance Access published on March 4, 2008
Bioinformatics 2008 24: 1049-1055; doi:10.1093/bioinformatics/btn084 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

GENE EXPRESSION:

Jin Xu and Xinping Cui
Robustified MANOVA with applications in detecting differentially expressed genes from oligonucleotide arrays
Bioinformatics Advance Access published on March 3, 2008
Bioinformatics 2008 24: 1056-1062; doi:10.1093/bioinformatics/btn053 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Matthias E. Futschik and Hanspeter Herzel
Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis
Bioinformatics Advance Access published on February 29, 2008
Bioinformatics 2008 24: 1063-1069; doi:10.1093/bioinformatics/btn072 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Peicheng Du, Gustavo Stolovitzky, Peter Horvatovich, Rainer Bischoff, Jihyeon Lim, and Frank Suits
A noise model for mass spectrometry based proteomics
Bioinformatics Advance Access published on March 18, 2008
Bioinformatics 2008 24: 1070-1077; doi:10.1093/bioinformatics/btn078 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

SYSTEMS BIOLOGY:

Guido Sanguinetti, Josselin Noirel, and Phillip C. Wright
MMG: a probabilistic tool to identify submodules of metabolic pathways
Bioinformatics Advance Access published on February 21, 2008
Bioinformatics 2008 24: 1078-1084; doi:10.1093/bioinformatics/btn066 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Pang-Kai Liu and Feng-Sheng Wang
Inference of biochemical network models in S-system using multiobjective optimization approach
Bioinformatics Advance Access published on March 5, 2008
Bioinformatics 2008 24: 1085-1092; doi:10.1093/bioinformatics/btn075 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

Desmond J. Higham, Marija Rasajski, and Natasa Przulj
Fitting a geometric graph to a protein–protein interaction network
Bioinformatics Advance Access published on March 14, 2008
Bioinformatics 2008 24: 1093-1099; doi:10.1093/bioinformatics/btn079 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

APPLICATIONS NOTES:

GENOME ANALYSIS:

Tony Chiang, Nianhua Li, Sandra Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, and Wolfgang Huber
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository
Bioinformatics Advance Access published on November 7, 2007
Bioinformatics 2008 24: 1100-1101; doi:10.1093/bioinformatics/btm518 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

James A. Morris, Simon A. Gayther, Ian J. Jacobs, and Christopher Jones
A suite of Perl modules for handling microarray data
Bioinformatics Advance Access published on March 18, 2008
Bioinformatics 2008 24: 1102-1103; doi:10.1093/bioinformatics/btn085 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS:

Wolfgang Rieping, Michael Nilges, and Michael Habeck
ISD: a software package for Bayesian NMR structure calculation
Bioinformatics Advance Access published on February 28, 2008
Bioinformatics 2008 24: 1104-1105; doi:10.1093/bioinformatics/btn062 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS:

Julie A. Douglas and Conner I. Sandefur
PedMine—a simulated annealing algorithm to identify maximally unrelated individuals in population isolates
Bioinformatics Advance Access published on March 5, 2008
Bioinformatics 2008 24: 1106-1108; doi:10.1093/bioinformatics/btn087 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY:

Gang Liu and Sriram Neelamegham
In silico Biochemical Reaction Network Analysis (IBRENA): a package for simulation and analysis of reaction networks
Bioinformatics Advance Access published on February 28, 2008
Bioinformatics 2008 24: 1109-1111; doi:10.1093/bioinformatics/btn061 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

David P. Nickerson, Alberto Corrias, and Martin L. Buist
Reference descriptions of cellular electrophysiology models
Bioinformatics Advance Access published on March 1, 2008
Bioinformatics 2008 24: 1112-1114; doi:10.1093/bioinformatics/btn080 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING:

Arek Gladki, Pawel Siedlecki, Szymon Kaczanowski, and Piotr Zielenkiewicz
e-LiSe—an online tool for finding needles in the ‘(Medline) haystack’
Bioinformatics Advance Access published on March 5, 2008
Bioinformatics 2008 24: 1115-1117; doi:10.1093/bioinformatics/btn086 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES:

Anders Lanzén and Tom Oinn
The Taverna Interaction Service: enabling manual interaction in workflows
Bioinformatics Advance Access published on March 12, 2008
Bioinformatics 2008 24: 1118-1120; doi:10.1093/bioinformatics/btn082 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.