Skip Navigation

Receive this page by email each issue: [Sign up for eTOCs]

Cover Image
Other Issues:
Previous Next 		Contents: Volume 24, Number 8, 15 April 2008   [Index by Author] 
Down ORIGINAL PAPERS
     GENOME ANALYSIS
     SEQUENCE ANALYSIS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
Down APPLICATIONS NOTES
     GENOME ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENETICS AND POPULATION ANALYSIS
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
     DATABASES AND ONTOLOGIES
Find articles in this issue containing these words:
[Search ALL Issues]

Front Matter (Print PDF) | Back Matter (Print PDF) | Table of Contents (Print PDF)

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

ORIGINAL PAPERS Back

GENOME ANALYSIS Back

Gennady Denisov, Brian Walenz, Aaron L. Halpern, Jason Miller, Nelson Axelrod, Samuel Levy, and Granger Sutton
Consensus generation and variant detection by Celera Assembler
Bioinformatics Advance Access published on March 4, 2008
Bioinformatics 2008 24: 1035-1040; doi:10.1093/bioinformatics/btn074 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

Jan Mrázek, Shaohua Xie, Xiangxue Guo, and Anuj Srivastava
AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes
Bioinformatics Advance Access published on February 26, 2008
Bioinformatics 2008 24: 1041-1048; doi:10.1093/bioinformatics/btn077 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SEQUENCE ANALYSIS Back

Yossef Kliger, Eyal Gofer, Assaf Wool, Amir Toporik, Avihay Apatoff, and Moshe Olshansky
Predicting proteolytic sites in extracellular proteins: only halfway there
Bioinformatics Advance Access published on March 4, 2008
Bioinformatics 2008 24: 1049-1055; doi:10.1093/bioinformatics/btn084 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

GENE EXPRESSION Back

Jin Xu and Xinping Cui
Robustified MANOVA with applications in detecting differentially expressed genes from oligonucleotide arrays
Bioinformatics Advance Access published on March 3, 2008
Bioinformatics 2008 24: 1056-1062; doi:10.1093/bioinformatics/btn053 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Matthias E. Futschik and Hanspeter Herzel
Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis
Bioinformatics Advance Access published on February 29, 2008
Bioinformatics 2008 24: 1063-1069; doi:10.1093/bioinformatics/btn072 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Peicheng Du, Gustavo Stolovitzky, Peter Horvatovich, Rainer Bischoff, Jihyeon Lim, and Frank Suits
A noise model for mass spectrometry based proteomics
Bioinformatics Advance Access published on March 18, 2008
Bioinformatics 2008 24: 1070-1077; doi:10.1093/bioinformatics/btn078 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

SYSTEMS BIOLOGY Back

Guido Sanguinetti, Josselin Noirel, and Phillip C. Wright
MMG: a probabilistic tool to identify submodules of metabolic pathways
Bioinformatics Advance Access published on February 21, 2008
Bioinformatics 2008 24: 1078-1084; doi:10.1093/bioinformatics/btn066 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Pang-Kai Liu and Feng-Sheng Wang
Inference of biochemical network models in S-system using multiobjective optimization approach
Bioinformatics Advance Access published on March 5, 2008
Bioinformatics 2008 24: 1085-1092; doi:10.1093/bioinformatics/btn075 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   OPEN ACCESS ARTICLE  

Desmond J. Higham, Marija Rasajski, and Natasa Przulj
Fitting a geometric graph to a protein–protein interaction network
Bioinformatics Advance Access published on March 14, 2008
Bioinformatics 2008 24: 1093-1099; doi:10.1093/bioinformatics/btn079 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

APPLICATIONS NOTES Back

GENOME ANALYSIS Back

Tony Chiang, Nianhua Li, Sandra Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, and Wolfgang Huber
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository
Bioinformatics Advance Access published on November 7, 2007
Bioinformatics 2008 24: 1100-1101; doi:10.1093/bioinformatics/btm518 [Abstract] [FREE Full Text] [Print PDF]   OPEN ACCESS ARTICLE  

James A. Morris, Simon A. Gayther, Ian J. Jacobs, and Christopher Jones
A suite of Perl modules for handling microarray data
Bioinformatics Advance Access published on March 18, 2008
Bioinformatics 2008 24: 1102-1103; doi:10.1093/bioinformatics/btn085 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

STRUCTURAL BIOINFORMATICS Back

Wolfgang Rieping, Michael Nilges, and Michael Habeck
ISD: a software package for Bayesian NMR structure calculation
Bioinformatics Advance Access published on February 28, 2008
Bioinformatics 2008 24: 1104-1105; doi:10.1093/bioinformatics/btn062 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS Back

Julie A. Douglas and Conner I. Sandefur
PedMine—a simulated annealing algorithm to identify maximally unrelated individuals in population isolates
Bioinformatics Advance Access published on March 5, 2008
Bioinformatics 2008 24: 1106-1108; doi:10.1093/bioinformatics/btn087 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

SYSTEMS BIOLOGY Back

Gang Liu and Sriram Neelamegham
In silico Biochemical Reaction Network Analysis (IBRENA): a package for simulation and analysis of reaction networks
Bioinformatics Advance Access published on February 28, 2008
Bioinformatics 2008 24: 1109-1111; doi:10.1093/bioinformatics/btn061 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

David P. Nickerson, Alberto Corrias, and Martin L. Buist
Reference descriptions of cellular electrophysiology models
Bioinformatics Advance Access published on March 1, 2008
Bioinformatics 2008 24: 1112-1114; doi:10.1093/bioinformatics/btn080 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATA AND TEXT MINING Back

Arek Gladki, Pawel Siedlecki, Szymon Kaczanowski, and Piotr Zielenkiewicz
e-LiSe—an online tool for finding needles in the ‘(Medline) haystack’
Bioinformatics Advance Access published on March 5, 2008
Bioinformatics 2008 24: 1115-1117; doi:10.1093/bioinformatics/btn086 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

Anders Lanzén and Tom Oinn
The Taverna Interaction Service: enabling manual interaction in workflows
Bioinformatics Advance Access published on March 12, 2008
Bioinformatics 2008 24: 1118-1120; doi:10.1093/bioinformatics/btn082 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.