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Previous Next 		Contents: Volume 25, Number 8, 15 April 2009   [Index by Author] 
Down ORIGINAL PAPERS
     GENOME ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     GENETICS AND POPULATION ANALYSIS
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
Down APPLICATIONS NOTE
     GENE EXPRESSION
     GENOME ANALYSIS
     SEQUENCE ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
     DATABASES AND ONTOLOGIES
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

ORIGINAL PAPERS Back

GENOME ANALYSIS Back

Ke-Shiuan Lynn, Li-Lan Li, Yen-Ju Lin, Chiuen-Huei Wang, Shu-Hui Sheng, Ju-Hwa Lin, Wayne Liao, Wen-Lian Hsu, and Wen-Harn Pan
A neural network model for constructing endophenotypes of common complex diseases: an application to male young-onset hypertension microarray data
Bioinformatics Advance Access published on February 23, 2009
Bioinformatics 2009 25: 981-988; doi:10.1093/bioinformatics/btp106 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Rukshan Batuwita and Vasile Palade
microPred: effective classification of pre-miRNAs for human miRNA gene prediction
Bioinformatics Advance Access published on February 20, 2009
Bioinformatics 2009 25: 989-995; doi:10.1093/bioinformatics/btp107 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

STRUCTURAL BIOINFORMATICS Back

Allan Lo, Yi-Yuan Chiu, Einar Andreas Rødland, Ping-Chiang Lyu, Ting-Yi Sung, and Wen-Lian Hsu
Predicting helix–helix interactions from residue contacts in membrane proteins
Bioinformatics Advance Access published on February 25, 2009
Bioinformatics 2009 25: 996-1003; doi:10.1093/bioinformatics/btp114 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

GENE EXPRESSION Back

C. Hundertmark, R. Fischer, T. Reinl, S. May, F. Klawonn, and L. Jänsch
MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics
Bioinformatics Advance Access published on October 24, 2008
Bioinformatics 2009 25: 1004-1011; doi:10.1093/bioinformatics/btn551 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Trevis M. Alleyne, Lourdes Peña-Castillo, Gwenael Badis, Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid D. Morris, and Timothy R. Hughes
Predicting the binding preference of transcription factors to individual DNA k-mers
Bioinformatics Advance Access published on December 16, 2008
Bioinformatics 2009 25: 1012-1018; doi:10.1093/bioinformatics/btn645 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

Ruth Heller, Elisabetta Manduchi, Gregory R. Grant, and Warren J. Ewens
A flexible two-stage procedure for identifying gene sets that are differentially expressed
Bioinformatics Advance Access published on February 11, 2009
Bioinformatics 2009 25: 1019-1025; doi:10.1093/bioinformatics/btp076 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Hui Jiang and Wing Hung Wong
Statistical inferences for isoform expression in RNA-Seq
Bioinformatics Advance Access published on February 25, 2009
Bioinformatics 2009 25: 1026-1032; doi:10.1093/bioinformatics/btp113 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS Back

Runqing Yang, Xin Wang, Jian Li, and Hongwen Deng
Bayesian robust analysis for genetic architecture of quantitative traits
Bioinformatics Advance Access published on October 30, 2008
Bioinformatics 2009 25: 1033-1039; doi:10.1093/bioinformatics/btn558 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

Mattia C. F. Prosperi, Roberto D'Autilia, Francesca Incardona, Andrea De Luca, Maurizio Zazzi, and Giovanni Ulivi
Stochastic modelling of genotypic drug-resistance for human immunodeficiency virus towards long-term combination therapy optimization
Bioinformatics Advance Access published on October 31, 2008
Bioinformatics 2009 25: 1040-1047; doi:10.1093/bioinformatics/btn568 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Phil Hyoun Lee and Hagit Shatkay
An integrative scoring system for ranking SNPs by their potential deleterious effects
Bioinformatics Advance Access published on February 19, 2009
Bioinformatics 2009 25: 1048-1055; doi:10.1093/bioinformatics/btp103 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Richard Bourgon, Eugenio Mancera, Alessandro Brozzi, Lars M. Steinmetz, and Wolfgang Huber
Array-based genotyping in S.cerevisiae using semi-supervised clustering
Bioinformatics Advance Access published on February 23, 2009
Bioinformatics 2009 25: 1056-1062; doi:10.1093/bioinformatics/btp104 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Colour version of figures] [Supplementary Data] [Supplementary Data]   Creative Commons License OPEN ACCESS  

SYSTEMS BIOLOGY Back

Gábor Boross, Katalin Orosz, and Illés J. Farkas
Human microRNAs co-silence in well-separated groups and have different predicted essentialities
Bioinformatics Advance Access published on January 8, 2009
Bioinformatics 2009 25: 1063-1069; doi:10.1093/bioinformatics/btp018 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

DATA AND TEXT MINING Back

Hang Chang, Rosa Anna DeFilippis, Thea D. Tlsty, and Bahram Parvin
Graphical methods for quantifying macromolecules through bright field imaging
Bioinformatics Advance Access published on August 14, 2008
Bioinformatics 2009 25: 1070-1075; doi:10.1093/bioinformatics/btn426 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

APPLICATIONS NOTE Back

GENE EXPRESSION Back

Jan Gertheiss and Gerhard Tutz
Supervised feature selection in mass spectrometry-based proteomic profiling by blockwise boosting
Bioinformatics Advance Access published on February 20, 2009
Bioinformatics 2009 25: 1076-1077; doi:10.1093/bioinformatics/btp094 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

GENOME ANALYSIS Back

Björn Nilsson, Mikael Johansson, Fatima Al-Shahrour, Anne E. Carpenter, and Benjamin L. Ebert
Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution
Bioinformatics Advance Access published on February 19, 2009
Bioinformatics 2009 25: 1078-1079; doi:10.1093/bioinformatics/btp091 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Yingfeng Wang, Zhibin Huang, Yong Wu, Russell L. Malmberg, and Liming Cai
RNATOPS-W: a web server for RNA structure searches of genomes
Bioinformatics Advance Access published on March 5, 2009
Bioinformatics 2009 25: 1080-1081; doi:10.1093/bioinformatics/btp095 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SEQUENCE ANALYSIS Back

Ankit Agrawal and Xiaoqiu Huang
PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance
Bioinformatics Advance Access published on February 27, 2009
Bioinformatics 2009 25: 1082-1083; doi:10.1093/bioinformatics/btp089 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

Robert Homann, David Fleer, Robert Giegerich, and Marc Rehmsmeier
mkESA: enhanced suffix array construction tool
Bioinformatics Advance Access published on February 26, 2009
Bioinformatics 2009 25: 1084-1085; doi:10.1093/bioinformatics/btp112 [Abstract] [FREE Full Text] [Print PDF]   Creative Commons License OPEN ACCESS  

STRUCTURAL BIOINFORMATICS Back

Sebastian Kelm, Jiye Shi, and Charlotte M. Deane
iMembrane: homology-based membrane-insertion of proteins
Bioinformatics Advance Access published on February 23, 2009
Bioinformatics 2009 25: 1086-1088; doi:10.1093/bioinformatics/btp102 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

GENE EXPRESSION Back

Theresa Scharl and Friedrich Leisch
gcExplorer: interactive exploration of gene clusters
Bioinformatics Advance Access published on February 18, 2009
Bioinformatics 2009 25: 1089-1090; doi:10.1093/bioinformatics/btp099 [Abstract] [Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

SYSTEMS BIOLOGY Back

Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf-Herman Fridman, Franck Pagès, Zlatko Trajanoski, and Jérôme Galon
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
Bioinformatics Advance Access published on February 23, 2009
Bioinformatics 2009 25: 1091-1093; doi:10.1093/bioinformatics/btp101 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data]   Creative Commons License OPEN ACCESS  

DATA AND TEXT MINING Back

Hong Li, Guohui Ding, Lu Xie, and Yixue Li
PAnnBuilder: an R package for assembling proteomic annotation data
Bioinformatics Advance Access published on February 23, 2009
Bioinformatics 2009 25: 1094-1095; doi:10.1093/bioinformatics/btp100 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

Alexandra Moura, Mário Soares, Carolina Pereira, Nuno Leitão, Isabel Henriques, and António Correia
INTEGRALL: a database and search engine for integrons, integrases and gene cassettes
Bioinformatics Advance Access published on February 19, 2009
Bioinformatics 2009 25: 1096-1098; doi:10.1093/bioinformatics/btp105 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.