Bioinformatics -- Table of Contents (4 [1])

Oxford Journals

Receive this page by email each issue: [Sign up for eTOCs]

Contents: Volume 4, Number 1, March 1988   [Index by Author]      Other Issues:

       EDITORIALS

       FIRST BYTE

       ORIGINAL PAPERS

       APPLICATIONS NOTES

       UPDATE

       BOOK REVIEWS

       SOFTWARE REVIEWS

Find articles in this issue containing these words:
[Search ALL Issues]

Front Matter (Print PDF) | Back Matter (Print PDF)

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

EDITORIALS:

Rob Beynon, Joe Modelevsky, Rich Roberts, and Dieter SÖ: EDITORIAL
Comput. Appl. Biosci. 1988 4: 3; doi:10.1093/bioinformatics/4.1.3 [Print PDF] [Request Permissions]

FIRST BYTE:

Raymond E. Carhart, Howard D. Cash, and John F. Moore: StrateGene^TM: object-oriented programming in molecular biology
Comput. Appl. Biosci. 1988 4: 3-9; doi:10.1093/bioinformatics/4.1.3-a [Abstract] [Print PDF] [Request Permissions]

ORIGINAL PAPERS:

Eugene W. Myers and Webb Miller: Optimal alignments in linear space
Comput. Appl. Biosci. 1988 4: 11-17; doi:10.1093/bioinformatics/4.1.11 [Abstract] [Print PDF] [Request Permissions]

Gad M. Landau, Uzi Vishkin, and Ruth Nussinov: Locating alignments with k differences for nucleotide and amino acid sequences
Comput. Appl. Biosci. 1988 4: 19-24; doi:10.1093/bioinformatics/4.1.19 [Abstract] [Print PDF] [Request Permissions]

Charles B. Lawrence and Daniel A. Goldman: Definition and identification of homology domains
Comput. Appl. Biosci. 1988 4: 25-33; doi:10.1093/bioinformatics/4.1.25 [Abstract] [Print PDF] [Request Permissions]

Jennifer D. Hall and Eugene W. Myers: A software tool for finding locally optimal alignments in protein and nucleic acid sequences
Comput. Appl. Biosci. 1988 4: 35-40; doi:10.1093/bioinformatics/4.1.35 [Abstract] [Print PDF] [Request Permissions]

Samuel Karlin, Macdonald Morris, Ghassan Ghandour, and Ming-Ying Leung: Algorithms for identifying local molecular sequence features
Comput. Appl. Biosci. 1988 4: 41-51; doi:10.1093/bioinformatics/4.1.41 [Abstract] [Print PDF] [Request Permissions]

Rodger Staden: Methods to define and locate patterns of motifs in sequences
Comput. Appl. Biosci. 1988 4: 53-60; doi:10.1093/bioinformatics/4.1.53 [Abstract] [Print PDF] [Request Permissions]

Michael Gribskov, Michelle Homyak, Jeffrey Edenfield, and David Eisenberg: Profile scanning for three-dimensional structural patterns in protein sequences
Comput. Appl. Biosci. 1988 4: 61-66; doi:10.1093/bioinformatics/4.1.61 [Abstract] [Print PDF] [Request Permissions]

J. F. Collins, A. F. W. Coulson, and A. Lyall: The significance of protein sequence similarities
Comput. Appl. Biosci. 1988 4: 67-71; doi:10.1093/bioinformatics/4.1.67 [Abstract] [Print PDF] [Request Permissions]

John Owens, Devjani Chatterjee, Ruth Nussinov, Andrzej K. Konopka, and Jacob V. Maizel, Jr: A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features
Comput. Appl. Biosci. 1988 4: 73-77; doi:10.1093/bioinformatics/4.1.73 [Abstract] [Print PDF] [Request Permissions]

Ulrich Grob and Kurt Stüber: Recognition of ill-defined signals in nucleic acid sequences
Comput. Appl. Biosci. 1988 4: 79-88; doi:10.1093/bioinformatics/4.1.79 [Abstract] [Print PDF] [Request Permissions]

Mauno Vihinen: An algorithm for simultaneous comparison of several sequences
Comput. Appl. Biosci. 1988 4: 89-92; doi:10.1093/bioinformatics/4.1.89 [Abstract] [Print PDF] [Request Permissions]

Ulrich Melcher: A readable and space-efficient DNA sequence representation: application to caulimoviral DNAs
Comput. Appl. Biosci. 1988 4: 93-96; doi:10.1093/bioinformatics/4.1.93 [Abstract] [Print PDF] [Request Permissions]

L. Allison and C. N. Yee: Restriction site mapping is in separation theory
Comput. Appl. Biosci. 1988 4: 97-101; doi:10.1093/bioinformatics/4.1.97 [Abstract] [Print PDF] [Request Permissions]

Pierre Tuffery, Philippe Dessen, Claude Mugnier, and Serge Hazout: Restriction map construction using a ‘complete sentences compatibility’ algorithm
Comput. Appl. Biosci. 1988 4: 103-110; doi:10.1093/bioinformatics/4.1.103 [Abstract] [Print PDF] [Request Permissions]

Bernard Bellon: Construction of restriction maps
Comput. Appl. Biosci. 1988 4: 111-115; doi:10.1093/bioinformatics/4.1.111 [Abstract] [Print PDF] [Request Permissions]

Trevor I. Dix and Dorota H. Kieronska: Errors between sites in restriction site mapping
Comput. Appl. Biosci. 1988 4: 117-123; doi:10.1093/bioinformatics/4.1.117 [Abstract] [Print PDF] [Request Permissions]

John Sulston, Frank Mallett, Rodger Staden, Richard Durbin, Terry Horsnell, and Alan Coulson: Software for genome mapping by fingerprinting techniques
Comput. Appl. Biosci. 1988 4: 125-132; doi:10.1093/bioinformatics/4.1.125 [Abstract] [Print PDF] [Request Permissions]

Wilma K. Olson and A. R. Srinivasan: The translation of DNA primary base sequence into three-dimensional structure
Comput. Appl. Biosci. 1988 4: 133-142; doi:10.1093/bioinformatics/4.1.133 [Abstract] [Print PDF] [Request Permissions]

Robert Cedergren, Daniel Gautheret, Guy Lapalme, and François Major: A secondary and tertiary structure editor for nucleic acids
Comput. Appl. Biosci. 1988 4: 143-146; doi:10.1093/bioinformatics/4.1.143 [Abstract] [Print PDF] [Request Permissions]

Robert K. -Z. Tan, M. Prabhakaran, Chang-Shung Tung, and Stephen C. Harvey: AUGUR: a program to predict, display and analyze the tertiary structure of B-DNA
Comput. Appl. Biosci. 1988 4: 147-151; doi:10.1093/bioinformatics/4.1.147 [Abstract] [Print PDF] [Request Permissions]

Shu-yun Le, Jih-Hsiang Chen, Kathleen M. Currey, and Jacob V. Maizel, Jr: A program for predicting significant RNA secondary structures
Comput. Appl. Biosci. 1988 4: 153-159; doi:10.1093/bioinformatics/4.1.153 [Abstract] [Print PDF] [Request Permissions]

Joseph L. Modelevsky and Thomas G. Akers: Reiterative RNA folding and occupancy rate analysis for mRNA modelling
Comput. Appl. Biosci. 1988 4: 161-166; doi:10.1093/bioinformatics/4.1.161 [Abstract] [Print PDF] [Request Permissions]

Robert E. Bruccoleri and Gerhard Heinrich: An improved algorithm for nucleic acid secondary structure display
Comput. Appl. Biosci. 1988 4: 167-173; doi:10.1093/bioinformatics/4.1.167 [Abstract] [Print PDF] [Request Permissions]

Rodney J. Folz and Jeffrey I. Gordon: PARA-SITE: a computer algorithm for rapidly analyzing the physical-chemical properties of amino acid sequences at sites of co- and post-translational protein processing
Comput. Appl. Biosci. 1988 4: 175-179; doi:10.1093/bioinformatics/4.1.175 [Abstract] [Print PDF] [Request Permissions]

B.A. Jameson and H. Wolf: The antigenic index: a novel algorithm for predicting antigenic determinants
Comput. Appl. Biosci. 1988 4: 181-186; doi:10.1093/bioinformatics/4.1.181 [Abstract] [Print PDF] [Request Permissions]

H. Wolf, S. Modrow, M. Motz, B.A. Jameson, G. Hermann, and B. Förtsch: An integrated family of amino acid sequence analysis programs
Comput. Appl. Biosci. 1988 4: 187-191; doi:10.1093/bioinformatics/4.1.187 [Abstract] [Print PDF] [Request Permissions]

David Shalloway, Scott F. Sneddon, and Edwin K. Little: Microcomputer-based three-dimensional stereoscopic macromolecular graphics display
Comput. Appl. Biosci. 1988 4: 193-196; doi:10.1093/bioinformatics/4.1.193 [Abstract] [Print PDF] [Request Permissions]

June A. Bossinger: The Annotator's Assistant: an expert system for direct submission of genetic sequence data
Comput. Appl. Biosci. 1988 4: 197-202; doi:10.1093/bioinformatics/4.1.197 [Abstract] [Print PDF] [Request Permissions]

Thomas P. Keenan and Stephen A. Krawetz: Computer video acquisition and analysis system for biological data
Comput. Appl. Biosci. 1988 4: 203-210; doi:10.1093/bioinformatics/4.1.203 [Abstract] [Print PDF] [Request Permissions]

APPLICATIONS NOTES:

Ken M. Williams: Version 5 of the Mount — Conrad — Myers Sequence Analysis Software Package now available
Comput. Appl. Biosci. 1988 4: 211; doi:10.1093/bioinformatics/4.1.211 [Print PDF] [Request Permissions]

Douglas W. Smith: A complete, yet flexible, system for DNA/protein sequence analysis using VAX/VMS computers
Comput. Appl. Biosci. 1988 4: 212; doi:10.1093/bioinformatics/4.1.212 [Print PDF] [Request Permissions]

Terry Friedemann: Alignment of multiple DNA and protein sequence data
Comput. Appl. Biosci. 1988 4: 213-214; doi:10.1093/bioinformatics/4.1.213 [Print PDF] [Request Permissions]

José Campione-Piccardo and Ricardo Moro: Modification of DNA ends and detection of restriction enzyme recognition sequences in their ligated junctions
Comput. Appl. Biosci. 1988 4: 215-216; doi:10.1093/bioinformatics/4.1.215 [Abstract] [Print PDF] [Request Permissions]

Edmond J. Breen, Lois H. Browne, Len Glue, and Keith L. Williams: The DNA rodent: a portable hand held DNA sequence reader
Comput. Appl. Biosci. 1988 4: 217; doi:10.1093/bioinformatics/4.1.217 [Print PDF] [Request Permissions]

H. B. Jenson: Enhancement of DNA sequence computer programs by using digitized voice output
Comput. Appl. Biosci. 1988 4: 218; doi:10.1093/bioinformatics/4.1.218 [Print PDF] [Request Permissions]

UPDATE:

Charles F.A. Bryce: Literature Survey
Comput. Appl. Biosci. 1988 4: 219-220; doi:10.1093/bioinformatics/4.1.219 [Print PDF] [Request Permissions]

: News and Views
Comput. Appl. Biosci. 1988 4: 220-222; doi:10.1093/bioinformatics/4.1.220 [Print PDF] [Request Permissions]

: Product Reviews
Comput. Appl. Biosci. 1988 4: 222-225; doi:10.1093/bioinformatics/4.1.222 [Print PDF] [Request Permissions]

BOOK REVIEWS:

D. Ingram: BOOK REVIEWS
Comput. Appl. Biosci. 1988 4: 227; doi:10.1093/bioinformatics/4.1.227 [Print PDF] [Request Permissions]

SOFTWARE REVIEWS:

J. Chlebowski: SOFTWARE REVIEWS
Comput. Appl. Biosci. 1988 4: 229; doi:10.1093/bioinformatics/4.1.229 [Print PDF] [Request Permissions]

G. Kneale: SOFTWARE REVIEWS
Comput. Appl. Biosci. 1988 4: 229-230; doi:10.1093/bioinformatics/4.1.229-a [Print PDF] [Request Permissions]

T.N. Bryant: SOFTWARE REVIEWS
Comput. Appl. Biosci. 1988 4: 230-232; doi:10.1093/bioinformatics/4.1.230 [Print PDF] [Request Permissions]

Online ISSN 1460-2059 - Print ISSN 1367-4803

Oxford Journals Oxford University Press