Bioinformatics

FIRST BYTE:

Ruth Nussinov

Compositional variations in DNA sequences
Comput. Appl. Biosci. 1991 7: 287-293; doi:10.1093/bioinformatics/7.3.287 [Abstract] [Print PDF] [Request Permissions]  

Ruth Nussinov

Signals in DNA sequences and their potential properties
Comput. Appl. Biosci. 1991 7: 295-299; doi:10.1093/bioinformatics/7.3.295 [Abstract] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS:

Peter D. Karp

Artificial intelligence methods for theory representation and hypothesis formation
Comput. Appl. Biosci. 1991 7: 301-308; doi:10.1093/bioinformatics/7.3.301 [Abstract] [Print PDF] [Request Permissions]  

Roderic Guigó, Ann Johanson, and Temple F. Smith

Automatic evaluation of protein sequence functional patterns
Comput. Appl. Biosci. 1991 7: 309-315; doi:10.1093/bioinformatics/7.3.309 [Abstract] [Print PDF] [Request Permissions]  

Martin Grabner and Reinhold Hofbauer

A computer program for molecular weight determination of DNA fragments (HOWBIG)
Comput. Appl. Biosci. 1991 7: 317-319; doi:10.1093/bioinformatics/7.3.317 [Abstract] [Print PDF] [Request Permissions]  

Julio Collado-Vides

The search for a grammatical theory of gene regulation is formally justified by showing the inadequacy of context-free grammars
Comput. Appl. Biosci. 1991 7: 321-326; doi:10.1093/bioinformatics/7.3.321 [Abstract] [Print PDF] [Request Permissions]  

Mondher Farza and Arlette Chéruy

CAMBIO: software for modelling and simulation of bioprocesses
Comput. Appl. Biosci. 1991 7: 327-336; doi:10.1093/bioinformatics/7.3.327 [Abstract] [Print PDF] [Request Permissions]  

Peter Reiner and Michael Brenowitz

Quantitative densitometry of autoradiograms: digital images representative of optical density
Comput. Appl. Biosci. 1991 7: 337-340; doi:10.1093/bioinformatics/7.3.337 [Abstract] [Print PDF] [Request Permissions]  

Raimund Schnobel

Integrated displays of aligned amino acid sequences and protein structures
Comput. Appl. Biosci. 1991 7: 341-346; doi:10.1093/bioinformatics/7.3.341 [Abstract] [Print PDF] [Request Permissions]  

David K. Y. Chiu and Ted Kolodziejczak

Inferring consensus structure from nucleic acid sequences
Comput. Appl. Biosci. 1991 7: 347-352; doi:10.1093/bioinformatics/7.3.347 [Abstract] [Print PDF] [Request Permissions]  

P. Arrigo, F. Giuliano, F. Scalia, A. Rapallo, and G. Damiani

Identification of a new motif on nucleic acid sequence data using Kohonen's self-organizing map
Comput. Appl. Biosci. 1991 7: 353-357; doi:10.1093/bioinformatics/7.3.353 [Abstract] [Print PDF] [Request Permissions]  

Minal P. Mujumdar

Monte Carlo simulations of ionic channel selectivity
Comput. Appl. Biosci. 1991 7: 359-364; doi:10.1093/bioinformatics/7.3.359 [Abstract] [Print PDF] [Request Permissions]  

Giorgio Mancini and Alessandro Valbonesi

MCS/SEL/BAS program—an overlapping clustering method with examples from mating type interactions of ciliated protozoa
Comput. Appl. Biosci. 1991 7: 365-371; doi:10.1093/bioinformatics/7.3.365 [Abstract] [Print PDF] [Request Permissions]  

Ricardo S. Cármenes

LSTSQ: a module for reliable constrained and unconstrained nonlinear regression
Comput. Appl. Biosci. 1991 7: 373-378; doi:10.1093/bioinformatics/7.3.373 [Abstract] [Print PDF] [Request Permissions]  

Ulrich Grob and Christoph J. Gartmann

COOL — A VAX program for finding COmmon OLigomers in nucleic acid sequences. Thyroid hormone receptor sequences used as an example.
Comput. Appl. Biosci. 1991 7: 379-381; doi:10.1093/bioinformatics/7.3.379 [Abstract] [Print PDF] [Request Permissions]  

Thierry Letellier, Christine Reder, and Jean-Pierre Mazat

CONTROL: software for the analysis of the control of metabolic networks
Comput. Appl. Biosci. 1991 7: 383-390; doi:10.1093/bioinformatics/7.3.383 [Abstract] [Print PDF] [Request Permissions]  

COMMUNICATION:

James W. Brown

Phylogenetic comparative analysis of RNA structure on Macintosh computers
Comput. Appl. Biosci. 1991 7: 391-393; doi:10.1093/bioinformatics/7.3.391 [Abstract] [Print PDF] [Request Permissions]  

APPLICATIONS NOTES:

Angelo Facchiano, Francesco Facchiano, Raffaele Ragone, Antonio Facchiano, and Giovanni Colonna

Converter: a program to convert crystallographic coordinates among different molecular graphics standards on PC-IBM platforms
Comput. Appl. Biosci. 1991 7: 395-396; doi:10.1093/bioinformatics/7.3.395 [Print PDF] [Request Permissions]  

James W. Brown

Materials & Methods: A Macintosh Hypercard stack for laboratory protocols
Comput. Appl. Biosci. 1991 7: 397; doi:10.1093/bioinformatics/7.3.397 [Print PDF] [Request Permissions]  

Tim J. Gleeson and Rodger Staden

An X windows and UNIX implementation of our sequence analysis package
Comput. Appl. Biosci. 1991 7: 398; doi:10.1093/bioinformatics/7.3.398 [Print PDF] [Request Permissions]  

József Baranyi and Tibor Illeni

A back-step algorithm for simulation of Monod-type models
Comput. Appl. Biosci. 1991 7: 399-401; doi:10.1093/bioinformatics/7.3.399 [Print PDF] [Request Permissions]  

UPDATE:

Alan H. Fielding

Literature Survey
Comput. Appl. Biosci. 1991 7: 403-404; doi:10.1093/bioinformatics/7.3.403 [Print PDF] [Request Permissions]  

News and Views
Comput. Appl. Biosci. 1991 7: 405-406; doi:10.1093/bioinformatics/7.3.405 [Print PDF] [Request Permissions]  

Product Information
Comput. Appl. Biosci. 1991 7: 407-410; doi:10.1093/bioinformatics/7.3.407 [Print PDF] [Request Permissions]  

BOOK REVIEW:

P. J. Fraser

CABIOS BOOK REVIEW
Comput. Appl. Biosci. 1991 7: 411; doi:10.1093/bioinformatics/7.3.411 [Print PDF] [Request Permissions]  

SOFTWARE REVIEWS:

A. Tunstall

CABIOS SOFTWARE REVIEWS
Comput. Appl. Biosci. 1991 7: 413; doi:10.1093/bioinformatics/7.3.413 [Print PDF] [Request Permissions]  

F. Doherty

CABIOS SOFTWARE REVIEWS
Comput. Appl. Biosci. 1991 7: 413; doi:10.1093/bioinformatics/7.3.413-a [Print PDF] [Request Permissions]  

CORRIGENDUM:

Johan G. de Boer

MARS: a program to find potential restriction sites
Comput. Appl. Biosci. 1991 7: 415; doi:10.1093/bioinformatics/7.3.415 [Abstract] [Print PDF] [Request Permissions]  

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