Bioinformatics

ORIGINAL PAPERS:

J. Dopazo, A. Rodriguez, J.C. Sáiz, and F. Sobrino

Design of primers for PCR ampiification of highly variable genomes
Comput. Appl. Biosci. 1993 9: 123-125; doi:10.1093/bioinformatics/9.2.123 [Abstract] [Print PDF] [Request Permissions]  

Martha D. Delahunty and Joseph P. G. Mack

A general method of curve fitting and error analysis using a spreadsheet: determination of the binding constants of tight binding ligands in variable volume assays
Comput. Appl. Biosci. 1993 9: 127-131; doi:10.1093/bioinformatics/9.2.127 [Abstract] [Print PDF] [Request Permissions]  

Jerry E. Solomon and Michael G. Harrington

A robust high-sensitivity algorithm for automated detection of proteins in two-dimensional electrophoresis gels
Comput. Appl. Biosci. 1993 9: 133-139; doi:10.1093/bioinformatics/9.2.133 [Abstract] [Print PDF] [Request Permissions]  

Kiyoshi Asai, Satoru Hayamizu, and Ken'ichi Handa

Prediction of protein secondary structure by the hidden Markov model
Comput. Appl. Biosci. 1993 9: 141-146; doi:10.1093/bioinformatics/9.2.141 [Abstract] [Print PDF] [Request Permissions]  

Fumiyoshi Sasagawa and Koji Tajima

Prediction of protein secondary structures by a neural network
Comput. Appl. Biosci. 1993 9: 147-152; doi:10.1093/bioinformatics/9.2.147 [Abstract] [Print PDF] [Request Permissions]  

Yo Matsuo and Minoru Kanehisa

An approach to systematic detection of protein structural motifs
Comput. Appl. Biosci. 1993 9: 153-159; doi:10.1093/bioinformatics/9.2.153 [Abstract] [Print PDF] [Request Permissions]  

Makoto Hirosawa, Masaki Hoshida, Masato Ishikawa, and Tomoyuki Toya

MASCOT: multiple alignment system for protein sequences based on three-way dynamic programming
Comput. Appl. Biosci. 1993 9: 161-167; doi:10.1093/bioinformatics/9.2.161 [Abstract] [Print PDF] [Request Permissions]  

Webb Miller

Building multiple alignments from pairwise alignments
Comput. Appl. Biosci. 1993 9: 169-176; doi:10.1093/bioinformatics/9.2.169 [Abstract] [Print PDF] [Request Permissions]  

Yves Van de Peer and Rupert De Wachter

TREECON: A software package for the construction and drawing of evolutionary trees
Comput. Appl. Biosci. 1993 9: 177-182; doi:10.1093/bioinformatics/9.2.177 [Abstract] [Print PDF] [Request Permissions]  

K. Rohde and P. Bork

A fast, sensitive pattern-matching approach for protein sequences
Comput. Appl. Biosci. 1993 9: 183-189; doi:10.1093/bioinformatics/9.2.183 [Abstract] [Print PDF] [Request Permissions]  

Claudine Landés, Alain Hénaut, and Jean-Loup Risler

Dot-plot comparisons by multivariate analysis (DOCMA): a tool for classifying protein sequences
Comput. Appl. Biosci. 1993 9: 191-196; doi:10.1093/bioinformatics/9.2.191 [Abstract] [Print PDF] [Request Permissions]  

G. Deléage and C. Geourjon

An interactive graphic program for calculating the secondary structure content of proteins from circular dichroism spectrum
Comput. Appl. Biosci. 1993 9: 197-199; doi:10.1093/bioinformatics/9.2.197 [Abstract] [Print PDF] [Request Permissions]  

A.J. Cuticchia, J. Arnold, and W.E. Timberlake

PCAP: probe choice and analysis package—a set of programs to aid in choosing synthetic oligomers for contig mapping
Comput. Appl. Biosci. 1993 9: 201-203; doi:10.1093/bioinformatics/9.2.201 [Abstract] [Print PDF] [Request Permissions]  

Pasquale Petrilli

Classification of protein sequences by their dipeptide composition
Comput. Appl. Biosci. 1993 9: 205-209; doi:10.1093/bioinformatics/9.2.205 [Abstract] [Print PDF] [Request Permissions]  

Beng-Kee Kiong and Tin-Wee Tan

A hypertext-like approach to navigating through the GCG sequence analysis package
Comput. Appl. Biosci. 1993 9: 211-214; doi:10.1093/bioinformatics/9.2.211 [Abstract] [Print PDF] [Request Permissions]  

A.J. Cuticchia, J. Arnold, and W.E. Timberlake

ODS: ordering DNA sequences—a physical mapping algorithm based on simulated annealing
Comput. Appl. Biosci. 1993 9: 215-219; doi:10.1093/bioinformatics/9.2.215 [Abstract] [Print PDF] [Request Permissions]  

Barry Fagin, J.Gill Watt, and Robert Gross

A special-purpose processor for gene sequence analysis
Comput. Appl. Biosci. 1993 9: 221-226; doi:10.1093/bioinformatics/9.2.221 [Abstract] [Print PDF] [Request Permissions]  

Minal P. Mujumdar and Chanchal K. Mitra

Electrogenic property of Na ⁺, K⁺ -ATPase through computer simulation
Comput. Appl. Biosci. 1993 9: 227-230; doi:10.1093/bioinformatics/9.2.227 [Abstract] [Print PDF] [Request Permissions]  

UPDATE:

Alan H. Fielding

News and Views
Comput. Appl. Biosci. 1993 9: 231; doi:10.1093/bioinformatics/9.2.231 [Print PDF] [Request Permissions]  

Literature Review
Comput. Appl. Biosci. 1993 9: 233-235; doi:10.1093/bioinformatics/9.2.233 [Print PDF] [Request Permissions]  

SOFTWARE REVIEWS:

J. Hofmeyr

Desktop Molecular Modeller version 2.0
Comput. Appl. Biosci. 1993 9: 237-238; doi:10.1093/bioinformatics/9.2.237 [Print PDF] [Request Permissions]  

Jen Harvey

Ball and Stick 3.0
Comput. Appl. Biosci. 1993 9: 238-239; doi:10.1093/bioinformatics/9.2.238 [Print PDF] [Request Permissions]  

F. Wright

N version 2.0 and Nsurv version 1.0
Comput. Appl. Biosci. 1993 9: 239-241; doi:10.1093/bioinformatics/9.2.239 [Print PDF] [Request Permissions]  

ERRATUM:

D. Waddington and D.W. Burt

Estimation of restriction maps with known site order using a generalized linear model
Comput. Appl. Biosci. 1993 9: 242; doi:10.1093/bioinformatics/9.2.242 [Abstract] [Print PDF] [Request Permissions]  

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