Bioinformatics -- Table of Contents (9 [3])

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Contents: Volume 9, Number 3, June 1993   [Index by Author]      Other Issues:

       ORIGINAL PAPERS

       APPLICATIONS NOTES

       UPDATE

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ORIGINAL PAPERS:

Takusato Karasawa, Kouji Tabuchi, Masaki Fumoto, and Tamio Yasukawa: Development of simulation models for protein folding in a thermal annealing process -I: a simulation of BPTI folding by the pearl necklace model
Comput. Appl. Biosci. 1993 9: 243-251; doi:10.1093/bioinformatics/9.3.243 [Abstract] [Print PDF] [Request Permissions]

Nicolay N. Kozlov and Eugene I. Kugushev: Computer simulation of tRNA secondary structure folding
Comput. Appl. Biosci. 1993 9: 253-258; doi:10.1093/bioinformatics/9.3.253 [Abstract] [Print PDF] [Request Permissions]

K. Satou, E. Furuichi, K. Takiguchi, T. Takagi, and S. Kuhara: A deductive database system PACADE for analyzing 3-D and secondary structures of protein
Comput. Appl. Biosci. 1993 9: 259-265; doi:10.1093/bioinformatics/9.3.259 [Abstract] [Print PDF] [Request Permissions]

Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, Atushi Ogiwara, and Minoru Kanehisa: Multiple sequence alignment by parallel simulated annealing
Comput. Appl. Biosci. 1993 9: 267-273; doi:10.1093/bioinformatics/9.3.267 [Abstract] [Print PDF] [Request Permissions]

J. Kleffe and E. Grau: The joint distribution of patterns in random sequences with application to the RC-measure for expressivity
Comput. Appl. Biosci. 1993 9: 275-283; doi:10.1093/bioinformatics/9.3.275 [Abstract] [Print PDF] [Request Permissions]

V. V. Panjukov: Finding steady alignments: similarity and distance
Comput. Appl. Biosci. 1993 9: 285-290; doi:10.1093/bioinformatics/9.3.285 [Abstract] [Print PDF] [Request Permissions]

A.Z. Maksyutov and E.S. Zagrebelnaya: ADEPT: a computer program for prediction of protein antigenic determinants
Comput. Appl. Biosci. 1993 9: 291-297; doi:10.1093/bioinformatics/9.3.291 [Abstract] [Print PDF] [Request Permissions]

Gerhard Mehldau and Gene Myers: A system for pattern matching applications on biosequences
Comput. Appl. Biosci. 1993 9: 299-314; doi:10.1093/bioinformatics/9.3.299 [Abstract] [Print PDF] [Request Permissions]

Thierry Rouxel, Antoine Danchin, and Alain Henaut: METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database
Comput. Appl. Biosci. 1993 9: 315-324; doi:10.1093/bioinformatics/9.3.315 [Abstract] [Print PDF] [Request Permissions]

A.D. Athanasiadis, A.A. Hatzopoulos, and G. Theophilidis: A data-acquisition system for the analysis of the isometric tension generated by an electrically stimulated skeletal muscle
Comput. Appl. Biosci. 1993 9: 325-330; doi:10.1093/bioinformatics/9.3.325 [Abstract] [Print PDF] [Request Permissions]

D.N. Nedde and M.O. Ward: Visualizing relationships between nucleic acid sequences using correlation images
Comput. Appl. Biosci. 1993 9: 331-335; doi:10.1093/bioinformatics/9.3.331 [Abstract] [Print PDF] [Request Permissions]

David W. Collins: FISH: a guide to protein-coding DNA sequences in the GenBank database
Comput. Appl. Biosci. 1993 9: 337-342; doi:10.1093/bioinformatics/9.3.337 [Abstract] [Print PDF] [Request Permissions]

Christophe Lefèvre and Joh-E Ikeda: The position end-set tree: A small automaton for word recognition in biological sequences
Comput. Appl. Biosci. 1993 9: 343-348; doi:10.1093/bioinformatics/9.3.343 [Abstract] [Print PDF] [Request Permissions]

Christophe Lefèvre and Joh-E Ikeda: Pattern recognition in DNA sequences and its application to consensus foot-printing
Comput. Appl. Biosci. 1993 9: 349-354; doi:10.1093/bioinformatics/9.3.349 [Abstract] [Print PDF] [Request Permissions]

Jan Mrázek and Jaroslav Kypr: UNIREP: A microcomputer program to find unique and repetitive nucleotide sequences in genomes
Comput. Appl. Biosci. 1993 9: 355-360; doi:10.1093/bioinformatics/9.3.355 [Abstract] [Print PDF] [Request Permissions]

Osamu Gotoh: Optimal alignment between groups of sequences and its application to multiple sequence alignment
Comput. Appl. Biosci. 1993 9: 361-370; doi:10.1093/bioinformatics/9.3.361 [Abstract] [Print PDF] [Request Permissions]

APPLICATIONS NOTES:

Hedvig Hegyi and Sándor Pongor: Predicting potential domain homologies from FASTA search results
Comput. Appl. Biosci. 1993 9: 371-372; doi:10.1093/bioinformatics/9.3.371 [Print PDF] [Request Permissions]

Scott R. Presnell, Bruce I. Cohen, and Fred E. Cohen: MacMatch: a tool for pattern-based protein secondary structure prediction
Comput. Appl. Biosci. 1993 9: 373-374; doi:10.1093/bioinformatics/9.3.373 [Abstract] [Print PDF] [Request Permissions]

Edward S. Chen, Chris Asano, and Daniel B. Davison: Parallel alignment of DNA sequences on the Connection Machine CM-2
Comput. Appl. Biosci. 1993 9: 375; doi:10.1093/bioinformatics/9.3.375 [Print PDF] [Request Permissions]

UPDATE:

Alan H. Fielding: News and Views
Comput. Appl. Biosci. 1993 9: 377; doi:10.1093/bioinformatics/9.3.377 [Print PDF] [Request Permissions]

Alan H. Fielding: Literature Review
Comput. Appl. Biosci. 1993 9: 377-379; doi:10.1093/bioinformatics/9.3.377-a [Print PDF] [Request Permissions]

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